Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis

A c-Myc-MicroRNA functional feedback loop affects hepatocarcinogenesis

(2013) Han Han et al.   HEPATOLOGY

Identifying miRNAs, targets and functions

(2012) B. Liu et al.   BRIEFINGS IN BIOINFORMATICS

Roles for MicroRNAs in Conferring Robustness to Biological Processes

(2012) Margaret S. Ebert et al.   CELL

MiR-93 enhances angiogenesis and metastasis by targeting LATS2

(2012) Ling Fang et al.   CELL CYCLE

Identification of microRNA-regulated gene networks by expression analysis of target genes

(2012) Vincenzo Alessandro Gennarino et al.   GENOME RESEARCH

MiR-320a is Downregulated in Patients with Myasthenia Gravis and Modulates Inflammatory Cytokines Production by Targeting Mitogen-activated Protein Kinase 1

(2012) Zhuoan Cheng et al.   JOURNAL OF CLINICAL IMMUNOLOGY

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells

(2012) Moussa Benhamed et al.   NATURE CELL BIOLOGY

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals

(2012) Takeshi Obayashi et al.   NUCLEIC ACIDS RESEARCH

Genenames.org: the HGNC resources in 2013

(2012) Kristian A. Gray et al.   NUCLEIC ACIDS RESEARCH

A Lasso regression model for the construction of microRNA-target regulatory networks

(2011) Yiming Lu et al.   BIOINFORMATICS

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

(2011) Shihua Zhang et al.   BIOINFORMATICS

ceRNAs: miRNA Target Mimic Mimics

(2011) Ignacio Rubio-Somoza et al.   CELL

An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma

(2011) Pavel Sumazin et al.   CELL

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

(2011) Yvonne Tay et al.   CELL

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

In Vivo Identification of Tumor- Suppressive PTEN ceRNAs in an Oncogenic BRAF-Induced Mouse Model of Melanoma

(2011) Florian A. Karreth et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

(2011) T. Vergoulis et al.   NUCLEIC ACIDS RESEARCH

From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs

(2011) Jan Gorodkin et al.   PLoS Computational Biology

Identifying functional miRNA–mRNA regulatory modules with correspondence latent dirichlet allocation

(2010) Bing Liu et al.   BIOINFORMATICS

Got target?: computational methods for microRNA target prediction and their extension

(2010) Hyeyoung Min et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

MicroRNA-15a fine-tunes the level of Delta-like 1 homolog (DLK1) in proliferating 3T3-L1 preadipocytes

(2010) Ditte C. Andersen et al.   EXPERIMENTAL CELL RESEARCH

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

Desperately seeking microRNA targets

(2010) Marshall Thomas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules

(2010) Eric Bonnet et al.   PLoS One

Lost in translation: an assessment and perspective for computational microRNA target identification

(2009) Panagiotis Alexiou et al.   BIOINFORMATICS

mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets

(2009) William Ritchie et al.   BIOINFORMATICS

Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma

(2009) M. Lionetti et al.   BLOOD

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Discovery of functional miRNA–mRNA regulatory modules with computational methods

(2009) Bing Liu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

miRGen 2.0: a database of microRNA genomic information and regulation

(2009) Panagiotis Alexiou et al.   NUCLEIC ACIDS RESEARCH

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model

(2008) Je-Gun Joung et al.   BIOINFORMATICS

miRNAminer: A tool for homologous microRNA gene search

(2008) Shay Artzi et al.   BMC BIOINFORMATICS

Downregulation of CCND1 and CDK6 by miR-34a induces cell cycle arrest

(2008) Fang Sun et al.   FEBS LETTERS

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY