Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations

Genome-Wide SNP Genotyping to Infer the Effects on Gene Functions in Tomato

(2013) H. Hirakawa et al.   DNA RESEARCH

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Selective Sweeps in Multilocus Models of Quantitative Traits

(2012) P. Pavlidis et al.   GENETICS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

The tomato genome fleshed out

(2012) Todd P Michael et al.   NATURE BIOTECHNOLOGY

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Dissection of genetic and environmental factors involved in tomato organoleptic quality

(2011) Paola Carli et al.   BMC PLANT BIOLOGY

Endless variation most beautiful

(2011) Michael Bevan   NATURE

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

(2011) K. Schneeberger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Population structure and genetic differentiation associated with breeding history and selection in tomato (Solanum lycopersicum L.)

(2010) S-C Sim et al.   HEREDITY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution

(2009) José M Jiménez-Gómez et al.   BMC PLANT BIOLOGY

Biology and genetic engineering of fruit maturation for enhanced quality and shelf-life

(2009) Antonio J Matas et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Combinatorial Interplay Among the 1-Aminocyclopropane-1-Carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana

(2009) A. Tsuchisaka et al.   GENETICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH