Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)
Authors
Keywords
<em class=EmphasisTypeItalic >Arabidopsis thaliana</em>, Cold acclimation, Gene annotation, LEA proteins, MAP kinases, Microarray design, microRNAs, Protein phosphatases, <em class=EmphasisTypeItalic >Thellungiella salsuginea</em>, Transcriptome sequencing
Journal
BMC GENOMICS
Volume 14, Issue 1, Pages 793
Publisher
Springer Nature
Online
2013-11-15
DOI
10.1186/1471-2164-14-793
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory
- (2013) Amanda Padovan et al. BMC PLANT BIOLOGY
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions
- (2012) Yang Lee et al. BMC PLANT BIOLOGY
- Type 2C protein phosphatases in plants
- (2012) Stefan Fuchs et al. FEBS Journal
- RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
- (2012) M. Lohse et al. NUCLEIC ACIDS RESEARCH
- Insights into salt tolerance from the genome ofThellungiella salsuginea
- (2012) Hua-Jun Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Life at the extreme: lessons from the genome
- (2012) Dong-Ha Oh et al. GENOME BIOLOGY
- The genome of the extremophile crucifer Thellungiella parvula
- (2011) Maheshi Dassanayake et al. NATURE GENETICS
- Mitogen-Activated Protein Kinase Signaling in Plants
- (2010) Maria Cristina et al. Annual Review of Plant Biology
- Gene Expression in Proliferating Cells of the Dinoflagellate Alexandrium catenella (Dinophyceae)
- (2010) E. Toulza et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
- (2010) Chao Sun et al. BMC GENOMICS
- Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
- (2010) Thomas L Parchman et al. BMC GENOMICS
- Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis
- (2010) M. Lohse et al. PLANT PHYSIOLOGY
- Emerging functions for plant MAP kinase phosphatases
- (2010) Sebastian Bartels et al. TRENDS IN PLANT SCIENCE
- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
- (2009) Daniel C. Koboldt et al. BIOINFORMATICS
- Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis
- (2009) Daniel A Hahn et al. BMC GENOMICS
- Learning from Evolution: Thellungiella Generates New Knowledge on Essential and Critical Components of Abiotic Stress Tolerance in Plants
- (2009) Anna Amtmann Molecular Plant
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- PMRD: plant microRNA database
- (2009) Zhenhai Zhang et al. NUCLEIC ACIDS RESEARCH
- A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
- (2009) BJÖRN USADEL et al. PLANT CELL AND ENVIRONMENT
- Redox Regulation in Photosynthetic Organisms: Signaling, Acclimation, and Practical Implications
- (2008) Christine H. Foyer et al. ANTIOXIDANTS & REDOX SIGNALING
- Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis
- (2008) Tongtong Xue et al. BMC GENOMICS
- High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
- (2008) Evandro Novaes et al. BMC GENOMICS
- LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
- (2008) Michaela Hundertmark et al. BMC GENOMICS
- Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
- (2008) J. CRISTOBAL VERA et al. MOLECULAR ECOLOGY
- Sequencing goes 454 and takes large-scale genomics into the wild
- (2008) HANS ELLEGREN MOLECULAR ECOLOGY
- Next-generation DNA sequencing
- (2008) Jay Shendure et al. NATURE BIOTECHNOLOGY
- The Arabidopsis Halophytic Relative Thellungiella halophila Tolerates Nitrogen-Limiting Conditions by Maintaining Growth, Nitrogen Uptake, and Assimilation
- (2008) S. Kant et al. PLANT PHYSIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now