Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)

Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory

(2013) Amanda Padovan et al.   BMC PLANT BIOLOGY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions

(2012) Yang Lee et al.   BMC PLANT BIOLOGY

Type 2C protein phosphatases in plants

(2012) Stefan Fuchs et al.   FEBS Journal

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Insights into salt tolerance from the genome ofThellungiella salsuginea

(2012) Hua-Jun Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Life at the extreme: lessons from the genome

(2012) Dong-Ha Oh et al.   GENOME BIOLOGY

The genome of the extremophile crucifer Thellungiella parvula

(2011) Maheshi Dassanayake et al.   NATURE GENETICS

Mitogen-Activated Protein Kinase Signaling in Plants

(2010) Maria Cristina et al.   Annual Review of Plant Biology

Gene Expression in Proliferating Cells of the Dinoflagellate Alexandrium catenella (Dinophyceae)

(2010) E. Toulza et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

(2010) Chao Sun et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis

(2010) M. Lohse et al.   PLANT PHYSIOLOGY

Emerging functions for plant MAP kinase phosphatases

(2010) Sebastian Bartels et al.   TRENDS IN PLANT SCIENCE

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis

(2009) Daniel A Hahn et al.   BMC GENOMICS

Learning from Evolution: Thellungiella Generates New Knowledge on Essential and Critical Components of Abiotic Stress Tolerance in Plants

(2009) Anna Amtmann   Molecular Plant

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Redox Regulation in Photosynthetic Organisms: Signaling, Acclimation, and Practical Implications

(2008) Christine H. Foyer et al.   ANTIOXIDANTS & REDOX SIGNALING

Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

(2008) Tongtong Xue et al.   BMC GENOMICS

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Sequencing goes 454 and takes large-scale genomics into the wild

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

The Arabidopsis Halophytic Relative Thellungiella halophila Tolerates Nitrogen-Limiting Conditions by Maintaining Growth, Nitrogen Uptake, and Assimilation

(2008) S. Kant et al.   PLANT PHYSIOLOGY