Regulatory elements of Caenorhabditis elegans ribosomal protein genes

Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes

(2011) E.S. Omelina et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans

(2011) C. Linhart et al.   GENOME RESEARCH

Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters

(2011) D. Zeevi et al.   GENOME RESEARCH

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression

(2011) Yunfei Wang et al.   NUCLEIC ACIDS RESEARCH

A global analysis of C. elegans trans-splicing

(2010) M. A. Allen et al.   GENOME RESEARCH

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

(2010) W.-J. Chung et al.   GENOME RESEARCH

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

(2010) W. Niu et al.   GENOME RESEARCH

Conserved elements associated with ribosomal genes and their trans-splice acceptor sites in Caenorhabditis elegans

(2010) Monica C. Sleumer et al.   NUCLEIC ACIDS RESEARCH

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

(2010) M. B. Gerstein et al.   SCIENCE

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same

(2010) Matthew T. Weirauch et al.   TRENDS IN GENETICS

Evolutionary Tinkering with Conserved Components of a Transcriptional Regulatory Network

(2010) Hugo Lavoie et al.   PLOS BIOLOGY

ModuleMaster: A new tool to decipher transcriptional regulatory networks

(2009) Clemens Wrzodek et al.   BIOSYSTEMS

Growth control and ribosome biogenesis

(2009) Harri Lempiäinen et al.   CURRENT OPINION IN CELL BIOLOGY

C. elegans BED domain transcription factor BED-3 controls lineage-specific cell proliferation during organogenesis

(2009) Takao Inoue et al.   DEVELOPMENTAL BIOLOGY

How Common Are Extraribosomal Functions of Ribosomal Proteins?

(2009) Jonathan R. Warner et al.   MOLECULAR CELL

Differential chromatin marking of introns and expressed exons by H3K36me3

(2009) Paulina Kolasinska-Zwierz et al.   NATURE GENETICS

In vivo analysis of Caenorhabditis elegans noncoding RNA promoter motifs

(2008) Tiantian Li et al.   BMC MOLECULAR BIOLOGY

Evolution of Drosophila ribosomal protein gene core promoters

(2008) Xiaotu Ma et al.   GENE

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

Crosstalk between c-Myc and ribosome in ribosomal biogenesis and cancer

(2008) Mu-Shui Dai et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

(2008) D. E. Newburger et al.   NUCLEIC ACIDS RESEARCH