Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Reliability-Oriented bioinformatic networks visualization

(2011) Ahmet Emre Aladağ et al.   BIOINFORMATICS

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

(2011) Pieter Audenaert et al.   BIOINFORMATICS

Interactive, multiscale navigation of large and complicated biological networks

(2011) Thanet Praneenararat et al.   BIOINFORMATICS

Web-Based Metabolic Network Visualization with a Zooming User Interface

(2011) Mario Latendresse et al.   BMC BIOINFORMATICS

WRKY Transcription Factors Involved in Activation of SA Biosynthesis Genes

(2011) Marcel C van Verk et al.   BMC PLANT BIOLOGY

MODEVO: exploring modularity and evolution of protein interaction networks

(2010) M. Wozniak et al.   BIOINFORMATICS

NeMo: Network Module identification in Cytoscape

(2010) Corban G Rivera et al.   BMC BIOINFORMATICS

jClust: a clustering and visualization toolbox

(2009) G. A. Pavlopoulos et al.   BIOINFORMATICS

Evolution of biomolecular networks — lessons from metabolic and protein interactions

(2009) Takuji Yamada et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology

(2009) Zhenjun Hu et al.   NUCLEIC ACIDS RESEARCH

Unraveling Protein Networks with Power Graph Analysis

(2008) Loïc Royer et al.   PLoS Computational Biology