In silico secretome analysis approach for next generation sequencing transcriptomic data

A Portrait of the Transcriptome of the Neglected Trematode, Fasciola gigantica—Biological and Biotechnological Implications

(2011) Neil D. Young et al.   PLoS Neglected Tropical Diseases

Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus

(2010) Cinzia Cantacessi et al.   BMC GENOMICS

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro

(2010) Alison J. Dicker et al.   EXPERIMENTAL PARASITOLOGY

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

(2010) Cinzia Cantacessi et al.   INFECTION GENETICS AND EVOLUTION

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

(2010) Cinzia Cantacessi et al.   NUCLEIC ACIDS RESEARCH

Transcripts analysis of infective larvae of an intestinal nematode, Strongyloides venezuelensis

(2010) Ayako Yoshida et al.   PARASITOLOGY INTERNATIONAL

Unlocking the Transcriptomes of Two Carcinogenic Parasites, Clonorchis sinensis and Opisthorchis viverrini

(2010) Neil D. Young et al.   PLoS Neglected Tropical Diseases

Massively Parallel Sequencing and Analysis of the Necator americanus Transcriptome

(2010) Cinzia Cantacessi et al.   PLoS Neglected Tropical Diseases

Elucidating the transcriptome of Fasciola hepatica — A key to fundamental and biotechnological discoveries for a neglected parasite

(2009) Neil D. Young et al.   BIOTECHNOLOGY ADVANCES

Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure

(2009) Luciane V Mello et al.   BMC GENOMICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Excretory/Secretory Proteome of the Adult Developmental Stage of Human Blood Fluke,Schistosoma japonicum

(2009) Feng Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

Molecular and functional characterisation of the heat shock protein 10 of Strongyloides ratti

(2009) Yasmina Tazir et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Helminth immunoregulation: The role of parasite secreted proteins in modulating host immunity

(2009) James P. Hewitson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Identification of a serodiagnostic antigen, legumain, by immunoproteomic analysis of excretory-secretory products ofClonorchis sinensisadult worms

(2009) Jung-Won Ju et al.   PROTEOMICS

Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling

(2009) Sasisekhar Bennuru et al.   PLoS Neglected Tropical Diseases

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Transcript profiles of long- and short-lived adults implicate protein synthesis in evolved differences in ageing in the nematode Strongyloides ratti

(2008) Fiona J. Thompson et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Proteomics Analysis of the Excretory/Secretory Component of the Blood-feeding Stage of the Hookworm,Ancylostoma caninum

(2008) Jason Mulvenna et al.   MOLECULAR & CELLULAR PROTEOMICS

Excretory–secretory products of larval Fasciola hepatica investigated using a two-dimensional proteomic approach

(2008) Benjamin E.F. Gourbal et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Proteomic analysis of excretory/secretory products released byTeladorsagia circumcinctalarvae early post-infection

(2008) S. K. SMITH et al.   PARASITE IMMUNOLOGY

Needles in the EST Haystack: Large-Scale Identification and Analysis of Excretory-Secretory (ES) Proteins in Parasitic Nematodes Using Expressed Sequence Tags (ESTs)

(2008) Shivashankar H. Nagaraj et al.   PLoS Neglected Tropical Diseases

Stage- and Gender-Specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products

(2008) Yovany Moreno et al.   PLoS Neglected Tropical Diseases

Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential

(2008) Stéphane Bellafiore et al.   PLoS Pathogens

Genes important in the parasitic life of the nematode Strongyloides ratti

(2007) Fiona J. Thompson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY