A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus

(2010) Cinzia Cantacessi et al.   BMC GENOMICS

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes

(2010) Maria A Doyle et al.   BMC GENOMICS

Unlocking the Transcriptomes of Two Carcinogenic Parasites, Clonorchis sinensis and Opisthorchis viverrini

(2010) Neil D. Young et al.   PLoS Neglected Tropical Diseases

Massively Parallel Sequencing and Analysis of the Necator americanus Transcriptome

(2010) Cinzia Cantacessi et al.   PLoS Neglected Tropical Diseases

Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance — Fundamental insights toward biotechnological outcomes

(2009) Shoba Ranganathan et al.   BIOTECHNOLOGY ADVANCES

A portrait of the “SCP/TAPS” proteins of eukaryotes — Developing a framework for fundamental research and biotechnological outcomes

(2009) C. Cantacessi et al.   BIOTECHNOLOGY ADVANCES

Elucidating the transcriptome of Fasciola hepatica — A key to fundamental and biotechnological discoveries for a neglected parasite

(2009) Neil D. Young et al.   BIOTECHNOLOGY ADVANCES

PAVE: Program for assembling and viewing ESTs

(2009) Carol Soderlund et al.   BMC GENOMICS

Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

(2009) Ben-Wen Li et al.   BMC GENOMICS

Gene Expression Profiling and Non–Small-Cell Lung Cancer: Where Are We Now?

(2009) Edgardo S. Santos et al.   Clinical Lung Cancer

Molecular visualization in the rational drug design process

(2009) Matthias Keil   Frontiers in Bioscience-Landmark

Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform

(2009) C. Cantacessi et al.   MOLECULAR AND CELLULAR PROBES

Sense from sequence reads: methods for alignment and assembly

(2009) Paul Flicek et al.   NATURE METHODS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A Comparative Chemogenomics Strategy to Predict Potential Drug Targets in the Metazoan Pathogen, Schistosoma mansoni

(2009) Conor R. Caffrey et al.   PLoS One

Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes

(2009) Maria D. Vibranovski et al.   PLoS Genetics

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches

(2008) Shivashankar H Nagaraj et al.   BMC BIOINFORMATICS

Integrated Genomic and Pharmacological Approaches to Identify Synthetic Lethal Genes as Cancer Therapeutic Targets

(2008) Shinji Mizuarai et al.   CURRENT MOLECULAR MEDICINE

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Proteomics Analysis of the Excretory/Secretory Component of the Blood-feeding Stage of the Hookworm,Ancylostoma caninum

(2008) Jason Mulvenna et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

(2008) A. Chang et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Cytosolic glutathione S-transferases of Oesophagostomum dentatum

(2008) A. JOACHIM et al.   PARASITOLOGY

iPath: interactive exploration of biochemical pathways and networks

(2008) Ivica Letunic et al.   TRENDS IN BIOCHEMICAL SCIENCES

Transcriptional Changes in the Hookworm, Ancylostoma caninum, during the Transition from a Free-Living to a Parasitic Larva

(2008) Bennett J. D. Datu et al.   PLoS Neglected Tropical Diseases

Stage- and Gender-Specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products

(2008) Yovany Moreno et al.   PLoS Neglected Tropical Diseases

Gender-enriched transcripts in Haemonchus contortus – predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans

(2007) Bronwyn E. Campbell et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY