Composite selection signals can localize the trait specific genomic regions in multi-breed populations of cattle and sheep

Detection of signatures of selective sweeps in the Blonde d'Aquitaine cattle breed

(2013) S. Boitard et al.   ANIMAL GENETICS

Molecular genetics of coat colour variations in White Galloway and White Park cattle

(2013) B. Brenig et al.   ANIMAL GENETICS

Identification of large selective sweeps associated with major genes in cattle

(2013) T. Druet et al.   ANIMAL GENETICS

Evidence for pleiotropism and recent selection in thePLAG1region in Australian Beef cattle

(2013) M. R. S. Fortes et al.   ANIMAL GENETICS

RCircos: an R package for Circos 2D track plots

(2013) Hongen Zhang et al.   BMC BIOINFORMATICS

Detection of selective sweeps in cattle using genome-wide SNP data

(2013) Holly R Ramey et al.   BMC GENOMICS

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

(2013) Laercio R Porto-Neto et al.   BMC GENOMICS

Associations between DGAT1, FABP4, LEP, RORC, and SCD1 gene polymorphisms and fat deposition in Spanish commercial beef1

(2013) C. Avilés et al.   JOURNAL OF ANIMAL SCIENCE

Genome-Wide Genetic Diversity and Differentially Selected Regions among Suffolk, Rambouillet, Columbia, Polypay, and Targhee Sheep

(2013) Lifan Zhang et al.   PLoS One

Detecting Loci under Recent Positive Selection in Dairy and Beef Cattle by Combining Different Genome-Wide Scan Methods

(2013) Yuri Tani Utsunomiya et al.   PLoS One

Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in Bovidae

(2013) Aurélie Allais-Bonnet et al.   PLoS One

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity

(2013) Nicolas Heslot et al.   PLoS One

SNP-based association mapping of the polled gene in divergent cattle breeds

(2012) D. Seichter et al.   ANIMAL GENETICS

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle

(2012) Mehar S Khatkar et al.   BMC GENOMICS

A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits

(2012) Jared E Decker et al.   BMC GENOMICS

Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle

(2012) Hermann Schwarzenbacher et al.   BMC GENOMICS

A Test for Selection Employing Quantitative Trait Locus and Mutation Accumulation Data

(2012) D. P. Rice et al.   GENETICS

Understanding and predicting complex traits: knowledge from cattle

(2012) K. E. Kemper et al.   HUMAN MOLECULAR GENETICS

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

A Quasi-Exclusive European Ancestry in the Senepol Tropical Cattle Breed Highlights the Importance of the slick Locus in Tropical Adaptation

(2012) Laurence Flori et al.   PLoS One

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

(2011) Juntao Li et al.   Biology Direct

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

(2011) Saber Qanbari et al.   BMC GENOMICS

Multi-ethnic studies in complex traits

(2011) Jingyuan Fu et al.   HUMAN MOLECULAR GENETICS

Bone Overgrowth-associated Mutations in theLRP4Gene Impair Sclerostin Facilitator Function

(2011) Olivier Leupin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Short communication: Genomic selection using a multi-breed, across-country reference population

(2011) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

Footprints of selection in the ancestral admixture of a New World Creole cattle breed

(2011) MATHIEU GAUTIER et al.   MOLECULAR ECOLOGY

Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature

(2011) Latifa Karim et al.   NATURE GENETICS

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

(2011) H. Noyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of tropical adaptation: comparing taurine and zebu cattle

(2010) E. K. F. Chan et al.   ANIMAL GENETICS

Haplotype allelic classes for detecting ongoing positive selection

(2010) Julie Hussin et al.   BMC BIOINFORMATICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Searching for Footprints of Positive Selection in Whole-Genome SNP Data From Nonequilibrium Populations

(2010) P. Pavlidis et al.   GENETICS

Population Structure With Localized Haplotype Clusters

(2010) S. R. Browning et al.   GENETICS

Identification of Selection Signatures in Cattle Breeds Selected for Dairy Production

(2010) A. Stella et al.   GENETICS

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

(2010) David Alvarez-Ponce et al.   Genome Biology and Evolution

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Molecular cloning, expression and characterization of bovine UQCC and its association with body measurement traits

(2010) Yongfeng Liu et al.   MOLECULES AND CELLS

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds

(2010) Mathieu Gautier et al.   PLoS One

A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection

(2010) S. R. Grossman et al.   SCIENCE

Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

(2009) William Barendse et al.   BMC GENOMICS

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

(2009) Mathieu Gautier et al.   BMC GENOMICS

Gene Variants in the Novel Type 2 Diabetes Loci CDC123/CAMK1D, THADA, ADAMTS9, BCL11A, and MTNR1B Affect Different Aspects of Pancreatic  -Cell Function

(2009) A. M. Simonis-Bik et al.   DIABETES

Signals of recent positive selection in a worldwide sample of human populations

(2009) J. K. Pickrell et al.   GENOME RESEARCH

Horn type and horn length genes map to the same chromosomal region in Soay sheep

(2009) S E Johnston et al.   HEREDITY

Genome scan of pigmentation traits in Friesian-Jersey crossbred cattle

(2009) Lin Liu et al.   Journal of Genetics and Genomics

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

The Genome Response to Artificial Selection: A Case Study in Dairy Cattle

(2009) Laurence Flori et al.   PLoS One

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

(2009) J. E. Decker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of DGAT1 and TG gene polymorphisms on intramuscular fat and on milk production traits in different cattle breeds in Hungary

(2008) István Anton et al.   ACTA VETERINARIA HUNGARICA

A genome map of divergent artificial selection betweenBos taurusdairy cattle andBos taurusbeef cattle

(2008) B. J. Hayes et al.   ANIMAL GENETICS

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

(2008) Mehar S Khatkar et al.   BMC GENOMICS

Detecting Local Adaptation Using the Joint Sampling of Polymorphism Data in the Parental and Derived Populations

(2008) H. Innan et al.   GENETICS

Testing for Neutrality in Samples With Sequencing Errors

(2008) G. Achaz   GENETICS

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

Frequency and Effect of the Bovine Acyl-CoA:Diacylglycerol Acyltransferase 1 (DGAT1) K232A Polymorphism in Swedish Dairy Cattle

(2008) J. Näslund et al.   JOURNAL OF DAIRY SCIENCE

Common variants in the GDF5-UQCC region are associated with variation in human height

(2008) Serena Sanna et al.   NATURE GENETICS

Genome-wide association analysis identifies 20 loci that influence adult height

(2008) Michael N Weedon et al.   NATURE GENETICS

Identification of ten loci associated with height highlights new biological pathways in human growth

(2008) Guillaume Lettre et al.   NATURE GENETICS