Clock model makes a large difference to age estimates of long-stemmed clades with no internal calibration: a test using Australian grasstrees

Molecular-clock methods for estimating evolutionary rates and timescales

(2014) Simon Y. W. Ho et al.   MOLECULAR ECOLOGY

How Was the Australian Flora Assembled Over the Last 65 Million Years? A Molecular Phylogenetic Perspective

(2013) Michael D. Crisp et al.   Annual Review of Ecology Evolution and Systematics

Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes

(2013) Sebastian Höhna   BIOINFORMATICS

Revenant clades in historical biogeography: the geology of New Zealand predisposes endemic clades to root age shifts

(2013) Prashant P. Sharma et al.   JOURNAL OF BIOGEOGRAPHY

Recovering speciation and extinction dynamics based on phylogenies

(2013) T. Stadler   JOURNAL OF EVOLUTIONARY BIOLOGY

Taller plants have lower rates of molecular evolution

(2013) Robert Lanfear et al.   Nature Communications

Phylogeny of the Asparagales based on three plastid and two mitochondrial genes

(2012) Ole Seberg et al.   AMERICAN JOURNAL OF BOTANY

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

(2012) P. Roxanne Steele et al.   AMERICAN JOURNAL OF BOTANY

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global history of the ancient monocot family Araceae inferred with models accounting for past continental positions and previous ranges based on fossils

(2012) Lars Nauheimer et al.   NEW PHYTOLOGIST

From Trajectories to Averages: An Improved Description of the Heterogeneity of Substitution Rates Along Lineages

(2012) Stéphane Guindon   SYSTEMATIC BIOLOGY

The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates

(2011) Brandon Gaut et al.   Annual Review of Ecology Evolution and Systematics

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment

(2011) Botond Sipos et al.   BMC BIOINFORMATICS

Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms

(2011) Thomas LP Couvreur et al.   BMC BIOLOGY

Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)

(2011) A. Dornburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

(2011) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

(2011) Michael D. Crisp et al.   NEW PHYTOLOGIST

Fire-stimulated flowering among resprouters and geophytes in Australia and South Africa

(2011) Byron B. Lamont et al.   PLANT ECOLOGY

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

(2011) Joseph Heled et al.   SYSTEMATIC BIOLOGY

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

(2011) Hervé Sauquet et al.   SYSTEMATIC BIOLOGY

Evaluation of Bayesian Models of Substitution Rate Evolution—Parental Guidance versus Mutual Independence

(2011) Martin Linder et al.   SYSTEMATIC BIOLOGY

The age and diversification of the angiosperms re-revisited

(2010) Charles D. Bell et al.   AMERICAN JOURNAL OF BOTANY

Molecular phylogenetics of Ruscaceae sensu lato and related families (Asparagales) based on plastid and nuclear DNA sequences

(2010) Joo-Hwan Kim et al.   ANNALS OF BOTANY

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

THE LOCAL-CLOCK PERMUTATION TEST: A SIMPLE TEST TO COMPARE RATES OF MOLECULAR EVOLUTION ON PHYLOGENETIC TREES

(2010) Robert Lanfear   EVOLUTION

A biogeographic model of fire regimes in Australia: current and future implications

(2010) R. A. Bradstock   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Diversity in obscurity: fossil flowers and the early history of angiosperms

(2010) E. M. Friis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms

(2010) Susana Magallón   SYSTEMATIC BIOLOGY

Why do species vary in their rate of molecular evolution?

(2009) L. Bromham   Biology Letters

EXPLOSIVE RADIATION OR CRYPTIC MASS EXTINCTION? INTERPRETING SIGNATURES IN MOLECULAR PHYLOGENIES

(2009) Michael D. Crisp et al.   EVOLUTION

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

On incomplete sampling under birth–death models and connections to the sampling-based coalescent

(2009) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

(2009) Bojian Zhong et al.   PLoS One

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Reticulate evolution in the natural range of the invasive wetland tree species Melaleuca quinquenervia

(2008) Lyn G. Cook et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Caledonia: a very old Darwinian island?

(2008) P. Grandcolas et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY