标题
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
作者
关键词
Plasmodium chabaudi, Plasmodium berghei, Plasmodium yoelii, Genomes, RNA-seq, Genotypic diversity, Multigene families, pirs, Phylogeny
出版物
BMC BIOLOGY
Volume 12, Issue 1, Pages -
出版商
Springer Nature
发表日期
2014-10-29
DOI
10.1186/s12915-014-0086-0
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Two Plasmodium 6-Cys family-related proteins have distinct and critical roles in liver-stage development
- (2014) Takeshi Annoura et al. FASEB JOURNAL
- Post-transcriptional silencing ofUIS4inPlasmodium bergheisporozoites is important for host switch
- (2014) Olivier Silvie et al. MOLECULAR MICROBIOLOGY
- A new computational approach redefines the subtelomeric vir superfamily of Plasmodium vivax
- (2013) Francisco Javier Lopez et al. BMC GENOMICS
- Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis
- (2013) Christian Frech et al. BMC GENOMICS
- Quantifying variation in the potential for antibody-mediated apparent competition among nine genotypes of the rodent malaria parasite Plasmodium chabaudi
- (2013) Karen J. Fairlie-Clarke et al. INFECTION GENETICS AND EVOLUTION
- Identification of aPlasmodium falciparumPhospholipid Transfer Protein
- (2013) Christiaan van Ooij et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mosquito transmission, growth phenotypes and the virulence of malaria parasites
- (2013) Laura C Pollitt et al. MALARIA JOURNAL
- Vector transmission regulates immune control of Plasmodium virulence
- (2013) Philip J. Spence et al. NATURE
- Role of Plasmepsin V in Export of Diverse Protein Families from thePlasmodium falciparumExportome
- (2013) Justin A. Boddey et al. TRAFFIC
- REAPR: a universal tool for genome assembly evaluation
- (2013) Martin Hunt et al. GENOME BIOLOGY
- Molecular evolution and phylogenetics of rodent malaria parasites
- (2012) Ricardo S Ramiro et al. BMC EVOLUTIONARY BIOLOGY
- Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS)
- (2012) Jennifer Lawton et al. BMC GENOMICS
- A Plasmodium Calcium-Dependent Protein Kinase Controls Zygote Development and Transmission by Translationally Activating Repressed mRNAs
- (2012) Sarah Sebastian et al. Cell Host & Microbe
- Proteomic and Genetic Analyses Demonstrate thatPlasmodium bergheiBlood Stages Export a Large and Diverse Repertoire of Proteins
- (2012) Erica M. Pasini et al. MOLECULAR & CELLULAR PROTEOMICS
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
- (2012) Shin-Ichiro Tachibana et al. NATURE GENETICS
- The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
- (2012) Daniel E Neafsey et al. NATURE GENETICS
- A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
- (2012) Martin T Swain et al. Nature Protocols
- The Role of Animal Models for Research on Severe Malaria
- (2012) Alister G. Craig et al. PLoS Pathogens
- Functional analysis of Plasmodium vivax VIR proteins reveals different subcellular localizations and cytoadherence to the ICAM-1 endothelial receptor
- (2011) M. Bernabeu et al. CELLULAR MICROBIOLOGY
- A systematic analysis of the early transcribed membrane protein family throughout the life cycle of Plasmodium yoelii
- (2011) Drew C. MacKellar et al. CELLULAR MICROBIOLOGY
- The mammalian START domain protein family in lipid transport in health and disease
- (2011) Barbara J Clark JOURNAL OF ENDOCRINOLOGY
- Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family
- (2011) Petra Ebbinghaus et al. MALARIA JOURNAL
- Linear amplification for deep sequencing
- (2011) Wieteke A M Hoeijmakers et al. Nature Protocols
- RATT: Rapid Annotation Transfer Tool
- (2011) Thomas D. Otto et al. NUCLEIC ACIDS RESEARCH
- Linkage maps from multiple genetic crosses and loci linked to growth-related virulent phenotype in Plasmodium yoelii
- (2011) J. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A toolbox to study liver stage malaria
- (2011) Miguel Prudêncio et al. TRENDS IN PARASITOLOGY
- Targeted Disruption of py235ebp-1: Invasion of Erythrocytes by Plasmodium yoelii Using an Alternative Py235 Erythrocyte Binding Protein
- (2011) Solabomi A. Ogun et al. PLoS Pathogens
- Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
- (2010) Thomas D. Otto et al. BIOINFORMATICS
- Small variant surface antigens andPlasmodiumevasion of immunity
- (2010) Noelle Yvonne Jemmely et al. Future Microbiology
- A single parasite gene determines strain-specific protective immunity against malaria: The role of the merozoite surface protein I
- (2010) Sandra Cheesman et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- The pir multigene family of Plasmodium: Antigenic variation and beyond
- (2010) Deirdre Cunningham et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Malaria gametocytogenesis
- (2010) David A. Baker MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Strain-specific immunity induced by immunization with pre-erythrocytic stages of Plasmodium chabaudi
- (2010) R. L. CULLETON et al. PARASITE IMMUNOLOGY
- That Was Then But This Is Now: Malaria Research in the Time of an Eradication Agenda
- (2010) S. H. I. Kappe et al. SCIENCE
- A genotype and phenotype database of genetically modified malaria-parasites
- (2010) Chris J. Janse et al. TRENDS IN PARASITOLOGY
- Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
- (2010) Gunnar R. Mair et al. PLoS Pathogens
- Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
- (2010) Isheng J Tsai et al. GENOME BIOLOGY
- ABACAS: algorithm-based automatic contiguation of assembled sequences
- (2009) S. Assefa et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum
- (2009) Thomas J. Templeton MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Gene encoding erythrocyte binding ligand linked to blood stage multiplication rate phenotype in Plasmodium yoelii yoelii
- (2009) S. Pattaradilokrat et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single amino acid substitution in Plasmodium yoelii erythrocyte ligand determines its localization and controls parasite virulence
- (2009) H. Otsuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein export in malaria parasites: do multiple export motifs add up to multiple export pathways?
- (2009) Tobias Spielmann et al. TRENDS IN PARASITOLOGY
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
- (2008) Tim Carver et al. BIOINFORMATICS
- Experimental manipulation of immune-mediated disease and its fitness costs for rodent malaria parasites
- (2008) Gráinne H Long et al. BMC EVOLUTIONARY BIOLOGY
- Erythrocyte Binding Protein PfRH5 Polymorphisms Determine Species-Specific Pathways of Plasmodium falciparum Invasion
- (2008) Karen Hayton et al. Cell Host & Microbe
- Interactions of the malaria parasite and its mammalian host
- (2008) Olivier Silvie et al. CURRENT OPINION IN MICROBIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Strain-specific immunity may drive adaptive polymorphism in the merozoite surface protein 1 of the rodent malaria parasite Plasmodium chabaudi
- (2008) Sandra Cheesman et al. INFECTION GENETICS AND EVOLUTION
- A study on pathogenicity and mosquito transmission success in the rodent malaria parasite Plasmodium chabaudi adami
- (2008) Naomi Gadsby et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- The genome of the simian and human malaria parasite Plasmodium knowlesi
- (2008) A. Pain et al. NATURE
- Immunity to malaria: more questions than answers
- (2008) Jean Langhorne et al. NATURE IMMUNOLOGY
- Evidence-Based Annotation of the Malaria Parasite's Genome Using Comparative Expression Profiling
- (2008) Yingyao Zhou et al. PLoS One
- A combined transcriptome and proteome survey of malaria parasite liver stages
- (2008) A. S. Tarun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
- Comparative evolutionary genomics of human malaria parasites
- (2008) Jane M. Carlton et al. TRENDS IN PARASITOLOGY
- Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily
- (2008) Carmen Fernandez-Becerra et al. TRENDS IN PARASITOLOGY
- Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite
- (2007) Sittiporn Pattaradilokrat et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
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