- Home
- Publications
- Publication Search
- Publication Details
Title
Effective normalization for copy number variation in Hi-C data
Authors
Keywords
Normalization, Hi-C, Cancer, Copy-number
Journal
BMC BIOINFORMATICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-09-06
DOI
10.1186/s12859-018-2256-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Copy number alterations unmasked as enhancer hijackers
- (2017) Rameen Beroukhim et al. NATURE GENETICS
- 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations
- (2017) Pengze Wu et al. Nature Communications
- A computational strategy to adjust for copy number in tumor Hi-C data
- (2016) Hua-Jun Wu et al. BIOINFORMATICS
- TAD disruption as oncogenic driver
- (2016) Anne-Laure Valton et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
- (2016) Phillippa C. Taberlay et al. GENOME RESEARCH
- Formation of new chromatin domains determines pathogenicity of genomic duplications
- (2016) Martin Franke et al. NATURE
- Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
- (2016) Joachim Weischenfeldt et al. NATURE GENETICS
- Organization and function of the 3D genome
- (2016) Boyan Bonev et al. NATURE REVIEWS GENETICS
- Regulation of disease-associated gene expression in the 3D genome
- (2016) Peter Hugo Lodewijk Krijger et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Breaking TADs: How Alterations of Chromatin Domains Result in Disease
- (2016) Darío G. Lupiáñez et al. TRENDS IN GENETICS
- Understanding Spatial Genome Organization: Methods and Insights
- (2016) Vijay Ramani et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Insulator dysfunction and oncogene activation in IDH mutant gliomas
- (2015) William A. Flavahan et al. NATURE
- A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
- (2014) Stefan Gröschel et al. CELL
- Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
- (2014) François Le Dily et al. GENES & DEVELOPMENT
- Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
- (2014) Phillippa C. Taberlay et al. GENOME RESEARCH
- Emerging landscape of oncogenic signatures across human cancers
- (2013) Giovanni Ciriello et al. NATURE GENETICS
- Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer
- (2013) Christoph Plass et al. NATURE REVIEWS GENETICS
- Cancer Genome Landscapes
- (2013) B. Vogelstein et al. SCIENCE
- HiCNorm: removing biases in Hi-C data via Poisson regression
- (2012) Ming Hu et al. BIOINFORMATICS
- Normalization of a chromosomal contact map
- (2012) Axel Cournac et al. BMC GENOMICS
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
- (2011) Valentina Boeva et al. BIOINFORMATICS
- Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
- (2011) Eitan Yaffe et al. NATURE GENETICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now