Reconstructing the architecture of the ancestral amniote genome

Bayesian sampling of genomic rearrangement scenarios via double cut and join

(2010) I. Miklos et al.   BIOINFORMATICS

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments

(2010) Son K. Pham et al.   BIOINFORMATICS

Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes

(2010) M. Muffato et al.   BIOINFORMATICS

Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II

(2010) Cedric Chauve et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Role of chromosomal rearrangements and conserved chromosome regions in amniote evolution

(2010) D. M. Larkin   Molecular Genetics Microbiology and Virology

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution

(2009) Claus Kemkemer et al.   BMC EVOLUTIONARY BIOLOGY

Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis

(2009) Benjamin M Skinner et al.   BMC GENOMICS

Improved criteria and comparative genomics tool provide new insights into grass paleogenomics

(2009) J. Salse et al.   BRIEFINGS IN BIOINFORMATICS

Polyploidy and genome restructuring: a variety of outcomes

(2009) Andrew L Hufton et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Breakpoint graphs and ancestral genome reconstructions

(2009) M. A. Alekseyev et al.   GENOME RESEARCH

Recovering genome rearrangements in the mammalian phylogeny

(2009) H. Zhao et al.   GENOME RESEARCH

Avian genome evolution: insights from a linkage map of the blue tit (Cyanistes caeruleus)

(2009) B Hansson et al.   HEREDITY

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

(2009) J. Salse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

(2009) Jonathan L. Gordon et al.   PLoS Genetics

Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time

(2008) Matthieu Muffato et al.   BIOESSAYS

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases

(2008) W. Xu et al.   BIOINFORMATICS

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

(2008) Darren K Griffin et al.   BMC GENOMICS

Addressing chromosome evolution in the whole-genome sequence era

(2008) Thomas Faraut   CHROMOSOME RESEARCH

A Linkage Map of the Zebra Finch Taeniopygia guttata Provides New Insights Into Avian Genome Evolution

(2008) J. Stapley et al.   GENETICS

A Gene-Based Genetic Linkage Map of the Collared Flycatcher (Ficedula albicollis) Reveals Extensive Synteny and Gene-Order Conservation During 100 Million Years of Avian Evolution

(2008) N. Backstrom et al.   GENETICS

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

(2008) B. Paten et al.   GENOME RESEARCH

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

(2008) J. Salse et al.   PLANT CELL

A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes

(2008) Cedric Chauve et al.   PLoS Computational Biology