Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences

Bioimage Informatics in the context of Drosophila research

(2014) Florian Jug et al.   METHODS

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing

(2011) Mark Winter et al.   Nature Protocols

Using an adherent cell culture of the mouse subependymal zone to study the behavior of adult neural stem cells on a single-cell level

(2011) Felipe Ortega et al.   Nature Protocols

Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

(2010) Zafer Aydin et al.   BMC BIOINFORMATICS

A high-level 3D visualization API for Java and ImageJ

(2010) Benjamin Schmid et al.   BMC BIOINFORMATICS

Adult SVZ Lineage Cells Home to and Leave the Vascular Niche via Differential Responses to SDF1/CXCR4 Signaling

(2010) Erzsebet Kokovay et al.   Cell Stem Cell

Computational prediction of neural progenitor cell fates

(2010) Andrew R Cohen et al.   NATURE METHODS

High resolution stereoscopic volume visualization of the mouse arginine vasopressin system

(2009) R.J. Clements et al.   JOURNAL OF NEUROSCIENCE METHODS

A Specialized Vascular Niche for Adult Neural Stem Cells

(2008) Masoud Tavazoie et al.   Cell Stem Cell

Adult SVZ Stem Cells Lie in a Vascular Niche: A Quantitative Analysis of Niche Cell-Cell Interactions

(2008) Qin Shen et al.   Cell Stem Cell