Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters

Accelerating Bayesian Hierarchical Clustering of Time Series Data with a Randomised Algorithm

(2013) Robert Darkins et al.   PLoS One

Bayesian correlated clustering to integrate multiple datasets

(2012) Paul Kirk et al.   BIOINFORMATICS

A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression

(2011) Alfredo A Kalaitzis et al.   BMC BIOINFORMATICS

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

(2011) Emma J Cooke et al.   BMC BIOINFORMATICS

Estimating replicate time shifts using Gaussian process regression

(2010) Q. Liu et al.   BIOINFORMATICS

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

(2010) Oliver Stegle et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Model-based method for transcription factor target identification with limited data

(2010) Antti Honkela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

(2008) P. Gao et al.   BIOINFORMATICS

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS