Discovery and analysis of consistent active sub-networks in cancers

Pathway discovery in metabolic networks by subgraph extraction

(2010) Karoline Faust et al.   BIOINFORMATICS

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

A Scalable Approach for Discovering Conserved Active Subnetworks across Species

(2010) Raamesh Deshpande et al.   PLoS Computational Biology

Identifying functional modules using expression profiles and confidence-scored protein interactions

(2009) Igor Ulitsky et al.   BIOINFORMATICS

A statistical framework for integrating two microarray data sets in differential expression analysis

(2009) Yinglei Lai et al.   BMC BIOINFORMATICS

Identifying disease-specific genes based on their topological significance in protein networks

(2009) Zoltán Dezső et al.   BMC Systems Biology

An Epigenetic Switch Involving NF-κB, Lin28, Let-7 MicroRNA, and IL6 Links Inflammation to Cell Transformation

(2009) Dimitrios Iliopoulos et al.   CELL

Epithelial-Mesenchymal Transitions in Development and Disease

(2009) Jean Paul Thiery et al.   CELL

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH