A Scalable Approach for Discovering Conserved Active Subnetworks across Species

Conserved and Divergent Roles of FGF Signaling in Mouse Epiblast Stem Cells and Human Embryonic Stem Cells

(2010) Boris Greber et al.   Cell Stem Cell

Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

(2010) Guoji Guo et al.   DEVELOPMENTAL CELL

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Expression of a Mutant Retinoic Acid Receptor β Alters Lineage Differentiation in Mouse Embryonic Stem Cells

(2010) Christina Chatzi et al.   STEM CELLS AND DEVELOPMENT

Identifying functional modules using expression profiles and confidence-scored protein interactions

(2009) Igor Ulitsky et al.   BIOINFORMATICS

Exploring the human genome with functional maps

(2009) C. Huttenhower et al.   GENOME RESEARCH

Bone morphogenic protein 2 induces Runx2 and osteopontin expression in human aortic valve interstitial cells: Role of Smad1 and extracellular signal-regulated kinase 1/2

(2009) Xiaoping Yang et al.   JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY

The evolution of Fox genes and their role in development and disease

(2009) Sridhar Hannenhalli et al.   NATURE REVIEWS GENETICS

The Modular Organization of Protein Interactions in Escherichia coli

(2009) José M. Peregrín-Alvarez et al.   PLoS Computational Biology

Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function

(2009) James C Costello et al.   GENOME BIOLOGY

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

(2009) Bolan Linghu et al.   GENOME BIOLOGY

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

(2008) M. T. Dittrich et al.   BIOINFORMATICS

Gene Cloning and Biochemical Characterization of the BMP-2 ofPinctada fucata

(2008) Tomoyuki MIYASHITA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

NANOG Is a Direct Target of TGFβ/Activin-Mediated SMAD Signaling in Human ESCs

(2008) Ren-He Xu et al.   Cell Stem Cell

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

Expression and functional analysis of G1 to S regulatory components reveals an important role for CDK2 in cell cycle regulation in human embryonic stem cells

(2008) I Neganova et al.   ONCOGENE

B-MYB Is Essential for Normal Cell Cycle Progression and Chromosomal Stability of Embryonic Stem Cells

(2008) Kirill V. Tarasov et al.   PLoS One

Evolutionarily Conserved Transcriptional Co-Expression Guiding Embryonic Stem Cell Differentiation

(2008) Yu Sun et al.   PLoS One

A Genomewide Functional Network for the Laboratory Mouse

(2008) Yuanfang Guan et al.   PLoS Computational Biology