Metabolic ensemble modeling for strain engineers

Automated Ensemble Modeling with modelMaGe: Analyzing Feedback Mechanisms in the Sho1 Branch of the HOG Pathway

(2011) Jörg Schaber et al.   PLoS One

Ensemble Modeling of Hepatic Fatty Acid Metabolism with a Synthetic Glyoxylate Shunt

(2010) Jason T. Dean et al.   BIOPHYSICAL JOURNAL

Redox homeostasis phenotypes in RubisCO-deficient Rhodobacter sphaeroides via ensemble modeling

(2010) Matthew L. Rizk et al.   BIOTECHNOLOGY PROGRESS

Reducing the allowable kinetic space by constructing ensemble of dynamic models with the same steady-state flux

(2010) Yikun Tan et al.   METABOLIC ENGINEERING

Ensembles of uncertain mathematical models can identify network response to therapeutic interventions

(2010) Deyan Luan et al.   Molecular BioSystems

Ensemble modeling for strain development of l-lysine-producing Escherichia coli

(2009) Carolina A. Contador et al.   METABOLIC ENGINEERING

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

Ensemble Modeling for Aromatic Production in Escherichia coli

(2009) Matthew L. Rizk et al.   PLoS One

Ensemble Modeling of Metabolic Networks

(2008) Linh M. Tran et al.   BIOPHYSICAL JOURNAL