Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia

(2013) Sarunyou Wongwilaiwalin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

High-coverage gene expression profiling analysis of the cellulase-producing fungus Acremonium cellulolyticus cultured using different carbon sources

(2013) Akihiro Hideno et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biotechnology of non-Saccharomyces yeasts—the basidiomycetes

(2013) Eric A. Johnson   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Novel multispecies microbial consortia involved in lignocellulose and 5-hydroxymethylfurfural bioconversion

(2013) Diego Javier Jiménez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Waste valorization by biotechnological conversion into added value products

(2013) Rossana Liguori et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Three dimensional structure of a bacterial α-l-fucosidase with a 5-membered iminocyclitol inhibitor

(2013) Daniel W. Wright et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Endowing non-cellulolytic microorganisms with cellulolytic activity aiming for consolidated bioprocessing

(2013) Ryosuke Yamada et al.   BIOTECHNOLOGY ADVANCES

Development of highly efficient, low-cost lignocellulolytic enzyme systems in the post-genomic era

(2013) Guodong Liu et al.   BIOTECHNOLOGY ADVANCES

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture

(2013) Trevor R Zuroff et al.   Biotechnology for Biofuels

Characterization of Cellulolytic Activities of Environmental Bacterial Consortia from an Argentinian Native Forest

(2013) Nelson Romano et al.   CURRENT MICROBIOLOGY

α-l-Fucosidase from Paenibacillus thiaminolyticus: Its hydrolytic and transglycosylation abilities

(2013) Eva Benešová et al.   GLYCOBIOLOGY

Phylogenetic Analysis and Metabolic Potential of Microbial Communities in an Industrial Bagasse Collection Site

(2013) Pattanop Kanokratana et al.   MICROBIAL ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Ascomycota Members Dominate Fungal Communities during Straw Residue Decomposition in Arable Soil

(2013) Anzhou Ma et al.   PLoS One

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

(2013) Ian H McHardy et al.   Microbiome

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Developing symbiotic consortia for lignocellulosic biofuel production

(2012) Trevor R. Zuroff et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing

(2012) Roland Wirth et al.   Biotechnology for Biofuels

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

(2012) Frank O Aylward et al.   ISME Journal

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

Bacterial decolorization and detoxification of black liquor from rayon grade pulp manufacturing paper industry and detection of their metabolic products

(2011) Ram Chandra et al.   BIORESOURCE TECHNOLOGY

Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat

(2011) Timofey A. Pankratov et al.   ENVIRONMENTAL MICROBIOLOGY

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities

(2011) Hikaru Suenaga   ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Beta-xylosidase activity of a GH3 glucosidase/xylosidase from yak rumen metagenome promotes the enzymatic degradation of hemicellulosic xylans

(2011) J. Zhou et al.   LETTERS IN APPLIED MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil

(2011) Kristen M. DeAngelis et al.   PLoS One

Biodiversity characterization of cellulolytic bacteria present on native Chaco soil by comparison of ribosomal RNA genes

(2011) Paola Talia et al.   RESEARCH IN MICROBIOLOGY

Alternatives to Trichoderma reesei in biofuel production

(2011) Alexander V. Gusakov   TRENDS IN BIOTECHNOLOGY

Complete genome sequence of “Enterobacter lignolyticus” SCF1

(2011) Kristen M. DeAngelis et al.   Standards in Genomic Sciences

Characterization of a Defined Cellulolytic and Xylanolytic Bacterial Consortium for Bioprocessing of Cellulose and Hemicelluloses

(2010) Benedict C. Okeke et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Weedy lignocellulosic feedstock and microbial metabolic engineering: advancing the generation of ‘Biofuel’

(2010) Anuj K. Chandel et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Selection and characteristics of a switchgrass-colonizing microbial community to produce extracellular cellulases and xylanases

(2010) HongYan Yang et al.   BIORESOURCE TECHNOLOGY

β Galactosidases and their potential applications: a review

(2010) Qayyum Husain   CRITICAL REVIEWS IN BIOTECHNOLOGY

Trichosporon xylopini sp. nov., a hemicellulose-degrading yeast isolated from the wood-inhabiting beetle Xylopinus saperdioides

(2010) P. Gujjari et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

(2010) Garret Suen et al.   PLoS Genetics

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis

(2009) M. J. McBride et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Screening of Oleaginous Yeast Strains Tolerant to Lignocellulose Degradation Compounds

(2009) Xi Chen et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Molecular and biochemical characterization of a novel xylanase from the symbiotic Sphingobacterium sp. TN19

(2009) Junpei Zhou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enzymatic hydrolyzing performance of Acremonium cellulolyticus and Trichoderma reesei against three lignocellulosic materials

(2009) Tatsuya Fujii et al.   Biotechnology for Biofuels

Thermally Treated Grass Fibers as Colonizable Substrate for Beneficial Bacterial Inoculum

(2008) R. Trifonova et al.   MICROBIAL ECOLOGY