Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA

Origins of Specificity in Protein-DNA Recognition

(2010) Remo Rohs et al.   Annual Review of Biochemistry

Differential stability of DNA crossovers in solution mediated by divalent cations

(2010) Péter Várnai et al.   NUCLEIC ACIDS RESEARCH

Helical Chirality: a Link between Local Interactions and Global Topology in DNA

(2010) Youri Timsit et al.   PLoS One

Crystal structure of a junction between two Z-DNA helices

(2010) M. de Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Theoretical Analysis of Disruptions in DNA Minicircles

(2009) Xiaozhong Zheng et al.   BIOPHYSICAL JOURNAL

3DNALandscapes: a database for exploring the conformational features of DNA

(2009) Guohui Zheng et al.   NUCLEIC ACIDS RESEARCH

Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles

(2009) Davide Demurtas et al.   NUCLEIC ACIDS RESEARCH

In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

(2009) Graham L. Randall et al.   NUCLEIC ACIDS RESEARCH

Local and global effects of strong DNA bending induced during molecular dynamics simulations

(2009) Jeremy Curuksu et al.   NUCLEIC ACIDS RESEARCH

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Towards a molecular dynamics consensus view of B-DNA flexibility

(2008) Alberto Pérez et al.   NUCLEIC ACIDS RESEARCH

Supercoiling and Denaturation of DNA Loops

(2008) T. B. Liverpool et al.   PHYSICAL REVIEW LETTERS

DNA Bending Stiffness on Small Length Scales

(2008) Chongli Yuan et al.   PHYSICAL REVIEW LETTERS