Coarse-grained molecular dynamics study of membrane fusion: Curvature effects on free energy barriers along the stalk mechanism

Stalk formation as a function of lipid composition studied by X-ray reflectivity

(2015) Ziad Khattari et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Mechanics of membrane fusion/pore formation

(2015) Marc Fuhrmans et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Simulation of polyethylene glycol and calcium-mediated membrane fusion

(2014) Martina Pannuzzo et al.   JOURNAL OF CHEMICAL PHYSICS

Expansion of the fusion stalk and its implication for biological membrane fusion

(2014) H. J. Risselada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effective interaction between small unilamellar vesicles as probed by coarse-grained molecular dynamics simulations

(2014) Wataru Shinoda et al.   PURE AND APPLIED CHEMISTRY

Free energy analysis along the stalk mechanism of membrane fusion

(2014) Shuhei Kawamoto et al.   Soft Matter

Molecular Dynamics Simulation Analysis of Membrane Defects and Pore Propensity of Hemifusion Diaphragms

(2013) Manami Nishizawa et al.   BIOPHYSICAL JOURNAL

Membrane-Mediated Protein-Protein Interactions and Connection to Elastic Models: A Coarse-Grained Simulation Analysis of Gramicidin A Association

(2013) Jejoong Yoo et al.   BIOPHYSICAL JOURNAL

Method of evaluating curvature-dependent elastic parameters for small unilamellar vesicles using molecular dynamics trajectory

(2013) Takenobu Nakamura et al.   JOURNAL OF CHEMICAL PHYSICS

A guiding potential method for evaluating the bending rigidity of tensionless lipid membranes from molecular simulation

(2013) Shuhei Kawamoto et al.   JOURNAL OF CHEMICAL PHYSICS

Computer simulation studies of self-assembling macromolecules

(2012) Wataru Shinoda et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Transition Path from Two Apposed Membranes to a Stalk Obtained by a Combination of Particle Simulations and String Method

(2012) Marcus Müller et al.   PHYSICAL REVIEW LETTERS

Line-Tension Controlled Mechanism for Influenza Fusion

(2012) Herre Jelger Risselada et al.   PLoS One

Energetics of stalk intermediates in membrane fusion are controlled by lipid composition

(2012) S. Aeffner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caught in the Act: Visualization of SNARE-Mediated Fusion Events in Molecular Detail

(2011) Herre Jelger Risselada et al.   CHEMBIOCHEM

Curvature-Dependent Elastic Properties of Liquid-Ordered Domains Result in Inverted Domain Sorting on Uniaxially Compressed Vesicles

(2011) H. Jelger Risselada et al.   PHYSICAL REVIEW LETTERS

Free energy analysis of vesicle-to-bicelle transformation

(2011) Wataru Shinoda et al.   Soft Matter

Coarse-grained force field for ionic surfactants

(2011) Wataru Shinoda et al.   Soft Matter

Curvature-Driven Lipid Sorting in Biomembranes

(2011) A. Callan-Jones et al.   Cold Spring Harbor Perspectives in Biology

Zwitterionic Lipid Assemblies: Molecular Dynamics Studies of Monolayers, Bilayers, and Vesicles Using a New Coarse Grain Force Field

(2010) Wataru Shinoda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Coarse-grain modelling of DMPC and DOPC lipid bilayers

(2010) Mario Orsi et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Membrane Fusion: the Emergence of a New Paradigm

(2010) M. Schick   JOURNAL OF STATISTICAL PHYSICS

Solvent-Exposed Tails as Prestalk Transition States for Membrane Fusion at Low Hydration

(2010) Yuliya G. Smirnova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Exploring the utility of coarse-grained water models for computational studies of interfacial systems

(2010) Xibing He et al.   MOLECULAR PHYSICS

The Fusion of Membranes and Vesicles: Pathway and Energy Barriers from Dissipative Particle Dynamics

(2009) Andrea Grafmüller et al.   BIOPHYSICAL JOURNAL

Measuring excess free energies of self-assembled membrane structures

(2009) Yuki Norizoe et al.   FARADAY DISCUSSIONS

Curvature-driven lipid sorting needs proximity to a demixing point and is aided by proteins

(2009) B. Sorre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Gaussian Curvature Elastic Energy of Intermediates in Membrane Fusion

(2008) David P. Siegel   BIOPHYSICAL JOURNAL

Large-Scale Molecular Dynamics Simulations of Self-Assembling Systems

(2008) M. L. Klein et al.   SCIENCE

Coarse-grained molecular modeling of non-ionic surfactant self-assembly

(2008) Wataru Shinoda et al.   Soft Matter