DNA-based approaches for evaluating historical demography in terrestrial vertebrates

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle

(2013) Xiangjiang Zhan et al.   NATURE GENETICS

GENETIC AND PHENOTYPIC DIVERGENCE BETWEEN LOW- AND HIGH-ALTITUDE POPULATIONS OF TWO RECENTLY DIVERGED CINNAMON TEAL SUBSPECIES

(2012) Robert E. Wilson et al.   EVOLUTION

Comparative Historical Demography of Migratory and Nonmigratory Birds from the Caribbean Island of Hispaniola

(2012) Anna L. Fahey et al.   Evolutionary Biology

Evidence of Sex-biased Dispersal inThermophis baileyiInferred from Microsatellite Markers

(2012) Sylvia Hofmann et al.   HERPETOLOGICA

High level population differentiation of finless porpoises (Neophocaena phocaenoides) in Chinese waters revealed by sequence variability of four nuclear introns

(2012) Jianfeg Ju et al.   MOLECULAR BIOLOGY REPORTS

Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex

(2012) Eric M. O'Neill et al.   MOLECULAR ECOLOGY

The influence of the arid Andean high plateau on the phylogeography and population genetics of guanaco (Lama guanicoe) in South America

(2012) Juan C. Marin et al.   MOLECULAR ECOLOGY

Historical introgression and the persistence of ghost alleles in the intermediate horseshoe bat (Rhinolophus affinis)

(2012) Xiuguang Mao et al.   MOLECULAR ECOLOGY

Population history of the Hispaniolan hutiaPlagiodontia aedium(Rodentia: Capromyidae): testing the model of ancient differentiation on a geotectonically complex Caribbean island

(2012) SELINA BRACE et al.   MOLECULAR ECOLOGY

Speciation in theRana chensinensisspecies complex and its relationship to the uplift of the Qinghai-Tibetan Plateau

(2012) WEI-WEI ZHOU et al.   MOLECULAR ECOLOGY

Common misconceptions in molecular ecology: echoes of the modern synthesis

(2012) STEPHEN A. KARL et al.   MOLECULAR ECOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

Incomplete lineage sorting or secondary admixture: disentangling historical divergence from recent gene flow in the Vinous-throated parrotbill (Paradoxornis webbianus)

(2012) Yanhua Qu et al.   MOLECULAR ECOLOGY

Phylogeographical patterns shed light on evolutionary process in South America

(2012) A. C. Turchetto-Zolet et al.   MOLECULAR ECOLOGY

Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia

(2012) J. Paupério et al.   MOLECULAR ECOLOGY

The influence of riverine barriers on phylogeographic patterns of Malagasy reed frogs (Heterixalus)

(2012) Philip-Sebastian Gehring et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics of Batrachoseps (Caudata, Plethodontidae) in southern California and Baja California: Mitochondrial-nuclear DNA discordance and the evolutionary history of B. major

(2012) Íñigo Martínez-Solano et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A climate for speciation: Rapid spatial diversification within the Sorex cinereus complex of shrews

(2012) Andrew G. Hope et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Significance of pre-Quaternary climate change for montane species diversity: Insights from Asian salamanders (Salamandridae: Pachytriton)

(2012) Yunke Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Next-Generation Phylogeography: A Targeted Approach for Multilocus Sequencing of Non-Model Organisms

(2012) Jonathan B. Puritz et al.   PLoS One

Multi-Locus Phylogeographic and Population Genetic Analysis of Anolis carolinensis: Historical Demography of a Genomic Model Species

(2012) Marc Tollis et al.   PLoS One

Sex-Biased Dispersal of a Frog (Odorrana schmackeri) Is Affected by Patch Isolation and Resource Limitation in a Fragmented Landscape

(2012) Yu Wang et al.   PLoS One

Genetic Variation and Population Structure in Jamunapari Goats Using Microsatellites, Mitochondrial DNA, and Milk Protein Genes

(2012) P. K. Rout et al.   TheScientificWorldJOURNAL

Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideriinferred from mtDNA and nuclear markers

(2011) Fernando Sequeira et al.   BMC EVOLUTIONARY BIOLOGY

DIVERSITY AND DEMOGRAPHY IN BERINGIA: MULTILOCUS TESTS OF PALEODISTRIBUTION MODELS REVEAL THE COMPLEX HISTORY OF ARCTIC GROUND SQUIRRELS

(2011) Kurt E. Galbreath et al.   EVOLUTION

Deep intra-island divergence of a montane forest endemic: phylogeography of the Puerto Rican frog Eleutherodactylus portoricensis (Anura: Eleutherodactylidae)

(2011) Brittany S. Barker et al.   JOURNAL OF BIOGEOGRAPHY

The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine

(2011) FERNANDO M. D’HORTA et al.   MOLECULAR ECOLOGY

Multilocus analysis of the evolutionary dynamics of rainforest bird populations in Southeast Asia

(2011) HAW CHUAN LIM et al.   MOLECULAR ECOLOGY

Phylogeography and genetic structure of the red-legged partridge (Alectoris rufa): more evidence for refugia within the Iberian glacial refugium

(2011) M. ESTER FERRERO et al.   MOLECULAR ECOLOGY

Bridging the gap: western rock skinks (Trachylepis sulcata) have a short history in South Africa

(2011) DANIEL M. PORTIK et al.   MOLECULAR ECOLOGY

Persistence and diversification of the Holarctic shrew, Sorex tundrensis (Family Soricidae), in response to climate change

(2011) ANDREW G. HOPE et al.   MOLECULAR ECOLOGY

Intraspecific variation in the direction and degree of sex-biased dispersal among sea-snake populations

(2011) AMANDA LANE et al.   MOLECULAR ECOLOGY

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Pleistocene glacial cycle effects on the phylogeography of the Chinese endemic bat species, Myotis davidii

(2010) Yuyan You et al.   BMC EVOLUTIONARY BIOLOGY

Spatial and temporal patterns of genetic diversity in an endangered Hawaiian honeycreeper, the Hawaii Akepa (Loxops coccineus coccineus)

(2010) Dawn M. Reding et al.   CONSERVATION GENETICS

Phylogeography and conservation of the endemic Hispaniolan Palm-Tanagers (Aves: Phaenicophilus)

(2010) Nicholas D. Sly et al.   CONSERVATION GENETICS

Mechanisms of radiation in a bat group from the genus Pipistrellus inferred by phylogeography, demography and population genetics

(2010) P. HULVA et al.   MOLECULAR ECOLOGY

Phylogeography of the Middle Eastern tree frogs (Hyla, Hylidae, Amphibia) as inferred from nuclear and mitochondrial DNA variation, with a description of a new species

(2010) Václav Gvoždík et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

When selection deceives phylogeographic interpretation: The case of the Mediterranean house gecko, Hemidactylus turcicus (Linnaeus, 1758)

(2010) C. Rato et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure

(2010) A. C. Stone et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Structure as Revealed by mtDNA and Microsatellites in Northern Fur Seals, Callorhinus ursinus, throughout Their Range

(2010) Bobette R. Dickerson et al.   PLoS One

Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles

(2010) S. H. Eo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

NATURAL DISTRIBUTIONS OF MITOCHONDRIAL SEQUENCE DIVERSITY SUPPORT NEW NULL HYPOTHESES

(2009) John P. Wares   EVOLUTION

THE COMBINED EFFECTS OF RIVERS AND REFUGIA GENERATE EXTREME CRYPTIC FRAGMENTATION WITHIN THE COMMON GROUND SKINK (SCINCELLA LATERALIS)

(2009) Nathan D. Jackson et al.   EVOLUTION

A multilocus study of pine grosbeak phylogeography supports the pattern of greater intercontinental divergence in Holarctic boreal forest birds than in birds inhabiting other high-latitude habitats

(2009) Sergei V. Drovetski et al.   JOURNAL OF BIOGEOGRAPHY

Divergence in the Face of Gene Flow: The Case of Two Newts (Amphibia: Salamandridae)

(2009) Krystyna Nadachowska et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative phylogeography of five avian species: implications for Pleistocene evolutionary history in the Qinghai-Tibetan plateau

(2009) Y. QU et al.   MOLECULAR ECOLOGY

Molecular insights into the colonization and chromosomal diversification of Madeiran house mice

(2009) D. W. FÖRSTER et al.   MOLECULAR ECOLOGY

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

Mitochondrial DNA Indicates Late Pleistocene Divergence of Populations of Heteronympha merope, an Emerging Model in Environmental Change Biology

(2009) Melanie Norgate et al.   PLoS One

The dynamic evolutionary history of the bananaquit (Coereba flaveola) in the Caribbean revealed by a multigene analysis

(2008) Eva Bellemain et al.   BMC EVOLUTIONARY BIOLOGY

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

INFERRING POPULATION HISTORY AND DEMOGRAPHY USING MICROSATELLITES, MITOCHONDRIAL DNA, AND MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) GENES

(2008) David H. Bos et al.   EVOLUTION

Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination

(2008) A. Ramirez-Soriano et al.   GENETICS

Microsatellite data show evidence for male-biased dispersal in the Caribbean lizardAnolis roquet

(2008) HELENA JOHANSSON et al.   MOLECULAR ECOLOGY

Fine-scale genetic structure of a long-lived reptile reflects recent habitat modification

(2008) J. A. MOORE et al.   MOLECULAR ECOLOGY

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

Parallel tagged sequencing on the 454 platform

(2008) Matthias Meyer et al.   Nature Protocols

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE