Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics
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Title
Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 30, Issue 12, Pages i149-i156
Publisher
Oxford University Press (OUP)
Online
2014-06-17
DOI
10.1093/bioinformatics/btu267
References
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Related references
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- (2012) H. Teeling et al. BRIEFINGS IN BIOINFORMATICS
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- (2012) Derrick E Fouts et al. Journal of Translational Medicine
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- (2010) V. J. Denef et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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