The RNA shapes studio

Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis

(2013) Georg Sauthoff et al.   BIOINFORMATICS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

(2011) Stefan Janssen et al.   BMC BIOINFORMATICS

Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales

(2011) Jan Reinkensmeier et al.   Genes

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Improved RNA secondary structure prediction by maximizing expected pair accuracy

(2009) Z. J. Lu et al.   RNA

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

KnotInFrame: prediction of −1 ribosomal frameshift events

(2008) Corinna Theis et al.   NUCLEIC ACIDS RESEARCH