Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

Faster computation of exact RNA shape probabilities

(2010) Stefan Janssen et al.   BIOINFORMATICS

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

Computational approaches for RNA energy parameter estimation

(2010) M. Andronescu et al.   RNA

Frequency and isostericity of RNA base pairs

(2009) Jesse Stombaugh et al.   NUCLEIC ACIDS RESEARCH

On quantitative effects of RNA shape abstraction

(2009) Markus E. Nebel et al.   THEORY IN BIOSCIENCES

The Dynamic Structural Basis of Differential Enhancement of Conformational Stability by 5′- and 3′-Dangling Ends in RNA†

(2008) John D. Liu et al.   BIOCHEMISTRY

Prediction of RNA secondary structure using generalized centroid estimators

(2008) Michiaki Hamada et al.   BIOINFORMATICS

Shape based indexing for faster search of RNA family databases

(2008) Stefan Janssen et al.   BMC BIOINFORMATICS

RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database

(2008) Mirela Andronescu et al.   BMC BIOINFORMATICS

Strong Correlation between SHAPE Chemistry and the Generalized NMR Order Parameter (S2) in RNA

(2008) Costin M. Gherghe et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Analysis and classification of RNA tertiary structures

(2008) M. Abraham et al.   RNA