FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data

Human seminal fluid as a source of prostate cancer-specific microRNA biomarkers

(2014) Luke A Selth et al.   ENDOCRINE-RELATED CANCER

Importance of the RNA secondary structure for the relative accumulation of clustered viral microRNAs

(2014) Maud Contrant et al.   NUCLEIC ACIDS RESEARCH

Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolus-associated microRNAs

(2014) Baoyan Bai et al.   FEBS Open Bio

Beyond microRNA – Novel RNAs derived from small non-coding RNA and their implication in cancer

(2013) Elena S. Martens-Uzunova et al.   CANCER LETTERS

Small RNAs derived from structural non-coding RNAs

(2013) Chong-Jian Chen et al.   METHODS

CoRAL: predicting non-coding RNAs from small RNA-sequencing data

(2013) Yuk Yee Leung et al.   NUCLEIC ACIDS RESEARCH

RNA-CODE: A Noncoding RNA Classification Tool for Short Reads in NGS Data Lacking Reference Genomes

(2013) Cheng Yuan et al.   PLoS One

The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC

(2012) Marc R Fabian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

(2011) Eivind Valen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Human box C/D snoRNA processing conservation across multiple cell types

(2011) Michelle S. Scott et al.   NUCLEIC ACIDS RESEARCH

Identification of human miRNA precursors that resemble box C/D snoRNAs

(2011) Motoharu Ono et al.   NUCLEIC ACIDS RESEARCH

Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis

(2011) Y-P Mei et al.   ONCOGENE

SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer

(2011) M. E. Askarian-Amiri et al.   RNA

Transfer RNA-derived fragments: origins, processing, and functions

(2011) Andrew Sobala et al.   Wiley Interdisciplinary Reviews-RNA

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

(2010) Markus Brameier et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Characterization of the Melanoma miRNAome by Deep Sequencing

(2010) Mitchell S. Stark et al.   PLoS One

Evidence for human microRNA-offset RNAs in small RNA sequencing data

(2009) D. Langenberger et al.   BIOINFORMATICS

Stressing Out over tRNA Cleavage

(2009) Debrah M. Thompson et al.   CELL

Angiogenin cleaves tRNA and promotes stress-induced translational repression

(2009) Satoshi Yamasaki et al.   JOURNAL OF CELL BIOLOGY

Implication of snoRNA U50 in human breast cancer

(2009) Xue-Yuan Dong et al.   Journal of Genetics and Genomics

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY