PSAR-Align: improving multiple sequence alignment using probabilistic sampling

The UCSC Genome Browser database: extensions and updates 2013

(2012) Laurence R. Meyer et al.   NUCLEIC ACIDS RESEARCH

PSAR: measuring multiple sequence alignment reliability by probabilistic sampling

(2011) Jaebum Kim et al.   NUCLEIC ACIDS RESEARCH

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

(2009) Carsten Kemena et al.   BIOINFORMATICS

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment

(2008) Benedict Paten et al.   BIOINFORMATICS

Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

(2008) B. Paten et al.   GENOME RESEARCH