Upcoming challenges for multiple sequence alignment methods in the high-throughput era

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

(2008) Amarendran R Subramanian et al.   Algorithms for Molecular Biology

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment

(2008) Benedict Paten et al.   BIOINFORMATICS

Segment-based multiple sequence alignment

(2008) T. Rausch et al.   BIOINFORMATICS

SeqAn An efficient, generic C++ library for sequence analysis

(2008) Andreas Döring et al.   BMC BIOINFORMATICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Fast embedding methods for clustering tens of thousands of sequences

(2008) Gordon Blackshields et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Multiple protein sequence alignment

(2008) Jimin Pei   CURRENT OPINION IN STRUCTURAL BIOLOGY

1000 Genomes project

(2008) Nayanah Siva   NATURE BIOTECHNOLOGY

R-Coffee: a method for multiple alignment of non-coding RNA

(2008) A. Wilm et al.   NUCLEIC ACIDS RESEARCH

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE