A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 29, Issue 17, Pages 2103-2111
Publisher
Oxford University Press (OUP)
Online
2013-06-20
DOI
10.1093/bioinformatics/btt357
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses
- (2012) Effie S Mutasa-Göttgens et al. BMC GENOMICS
- Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis
- (2012) Yamile Marquez et al. GENOME RESEARCH
- A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing
- (2012) Marc W. Schmid et al. PLoS One
- RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem
- (2012) Angela M. Orshinsky et al. PLoS One
- HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors
- (2011) Yuan Zhang et al. BMC BIOINFORMATICS
- Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
- (2011) Barbara Feldmeyer et al. BMC GENOMICS
- RNA-Seq improves annotation of protein-coding genes in the cucumber genome
- (2011) Zhen Li et al. BMC GENOMICS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Next-generation transcriptome assembly
- (2011) Jeffrey A. Martin et al. NATURE REVIEWS GENETICS
- Assembly of large genomes using second-generation sequencing
- (2010) M. C. Schatz et al. GENOME RESEARCH
- Assembly algorithms for next-generation sequencing data
- (2010) Jason R. Miller et al. GENOMICS
- The Pfam protein families database
- (2009) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- FIGfams: yet another set of protein families
- (2009) Folker Meyer et al. NUCLEIC ACIDS RESEARCH
- Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing
- (2009) D. R. Yoder-Himes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Metagenomics: Read Length Matters
- (2008) K. E. Wommack et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- Viral Population Estimation Using Pyrosequencing
- (2008) Nicholas Eriksson et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started