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Title
Discriminative motif optimization based on perceptron training
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 30, Issue 7, Pages 941-948
Publisher
Oxford University Press (OUP)
Online
2013-12-26
DOI
10.1093/bioinformatics/btt748
References
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Related references
Note: Only part of the references are listed.- Evaluation of methods for modeling transcription factor sequence specificity
- (2013) Matthew T Weirauch et al. NATURE BIOTECHNOLOGY
- P-value-based regulatory motif discovery using positional weight matrices
- (2012) H. Hartmann et al. GENOME RESEARCH
- A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
- (2012) Morgane Thomas-Chollier et al. Nature Protocols
- ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions
- (2012) Terrence S. Furey NATURE REVIEWS GENETICS
- Inferring direct DNA binding from ChIP-seq
- (2012) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- POWRS: Position-Sensitive Motif Discovery
- (2012) Ian W. Davis et al. PLoS One
- DECOD: fast and accurate discriminative DNA motif finding
- (2011) Peter Huggins et al. BIOINFORMATICS
- DREME: motif discovery in transcription factor ChIP-seq data
- (2011) Timothy L. Bailey BIOINFORMATICS
- RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
- (2011) Morgane Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
- AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses
- (2011) Jiantao Shi et al. PLoS One
- PhyloGibbs-MP: Module Prediction and Discriminative Motif-Finding by Gibbs Sampling
- (2011) Rahul Siddharthan PLoS Computational Biology
- Identification of Context-Dependent Motifs by Contrasting ChIP Binding Data
- (2010) Mike J. Mason et al. BIOINFORMATICS
- Deep and wide digging for binding motifs in ChIP-Seq data
- (2010) I. V. Kulakovskiy et al. BIOINFORMATICS
- DISCOVER: a feature-based discriminative method for motif search in complex genomes
- (2009) Wenjie Fu et al. BIOINFORMATICS
- DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices
- (2009) Isabelle da Piedade et al. BMC BIOINFORMATICS
- Seeder: discriminative seeding DNA motif discovery
- (2008) François Fauteux et al. BIOINFORMATICS
- Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
- (2008) C. Linhart et al. GENOME RESEARCH
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