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Title
POWRS: Position-Sensitive Motif Discovery
Authors
Keywords
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Journal
PLoS One
Volume 7, Issue 7, Pages e40373
Publisher
Public Library of Science (PLoS)
Online
2012-07-06
DOI
10.1371/journal.pone.0040373
References
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Related references
Note: Only part of the references are listed.- A tree-based approach for motif discovery and sequence classification
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- De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference
- (2011) Jens Keilwagen et al. PLoS Computational Biology
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- (2010) V. Narang et al. BIOINFORMATICS
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- A paired-end sequencing strategy to map the complex landscape of transcription initiation
- (2010) Ting Ni et al. NATURE METHODS
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- Evidence-ranked motif identification
- (2010) Stoyan Georgiev et al. GENOME BIOLOGY
- Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships
- (2009) Ken Daigoro Yokoyama et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
- (2009) Elodie Portales-Casamar et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Discovery of cis-Elements in Promoter Sequences Using Gene Expression
- (2009) Maxim Troukhan et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
- (2008) T. Abeel et al. BIOINFORMATICS
- Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites
- (2008) Nak-Kyeong Kim et al. BMC BIOINFORMATICS
- Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
- (2008) C. Linhart et al. GENOME RESEARCH
- Erk Kinases Link Pre-B Cell Receptor Signaling to Transcriptional Events Required for Early B Cell Expansion
- (2008) Tomoharu Yasuda et al. IMMUNITY
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