Selection of human tissue-specific elementary flux modes using gene expression data

Identification of microRNA-regulated gene networks by expression analysis of target genes

(2012) Vincenzo Alessandro Gennarino et al.   GENOME RESEARCH

Large-Scale Pathway-Based Analysis of Bladder Cancer Genome-Wide Association Data from Five Studies of European Background

(2012) Idan Menashe et al.   PLoS One

Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc

(2012) Miles Trupp et al.   GENOME BIOLOGY

Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks

(2011) Siu Hung Joshua Chan et al.   BIOINFORMATICS

Path finding methods accounting for stoichiometry in metabolic networks

(2011) Jon Pey et al.   GENOME BIOLOGY

Exploring metabolic pathways in genome-scale networks via generating flux modes

(2010) A. Rezola et al.   BIOINFORMATICS

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology

(2010) Christoph Gille et al.   Molecular Systems Biology

Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism

(2010) Livnat Jerby et al.   Molecular Systems Biology

Estimating the proportion of microarray probes expressed in an RNA sample

(2010) Wei Shi et al.   NUCLEIC ACIDS RESEARCH

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

(2010) Matthew N. McCall et al.   NUCLEIC ACIDS RESEARCH

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'

(2009) L. F. d. Figueiredo et al.   BIOINFORMATICS

Computing the shortest elementary flux modes in genome-scale metabolic networks

(2009) Luis F. de Figueiredo et al.   BIOINFORMATICS

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

(2009) C. Kaleta et al.   GENOME RESEARCH

Bile acids: Chemistry, physiology, and pathophysiology

(2009) Maria J Monte et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Large-scale computation of elementary flux modes with bit pattern trees

(2008) Marco Terzer et al.   BIOINFORMATICS

Network-based prediction of human tissue-specific metabolism

(2008) Tomer Shlomi et al.   NATURE BIOTECHNOLOGY