Exposing the co-adaptive potential of protein–protein interfaces through computational sequence design

A new method for revealing correlated mutations under the structural and functional constraints in proteins

(2009) Byung-Chul Lee et al.   BIOINFORMATICS

Backbone flexibility in computational protein design

(2009) Daniel J Mandell et al.   CURRENT OPINION IN BIOTECHNOLOGY

Exploring functional roles of multibinding protein interfaces

(2009) Manoj Tyagi et al.   PROTEIN SCIENCE

Correlated mutation analyses on super-family alignments reveal functionally important residues

(2009) Remko K. P. Kuipers et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Graphical models of protein-protein interaction specificity from correlated mutations and interaction data

(2009) John Thomas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Energetic determinants of protein binding specificity: Insights into protein interaction networks

(2009) Pablo Carbonell et al.   PROTEOMICS

Tradeoff Between Stability and Multispecificity in the Design of Promiscuous Proteins

(2009) Menachem Fromer et al.   PLoS Computational Biology

A computational framework to empower probabilistic protein design

(2008) M. Fromer et al.   BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Protein co-evolution, co-adaptation and interactions

(2008) Florencio Pazos et al.   EMBO JOURNAL

Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree

(2008) Maricel G. Kann et al.   JOURNAL OF MOLECULAR BIOLOGY

Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking

(2008) H. Madaoui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of direct residue contacts in protein-protein interaction by message passing

(2008) M. Weigt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reassessing a sparse energetic network within a single protein domain

(2008) C. N. Chi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space

(2008) Menachem Fromer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS