4.4 Article

Distinct Binding Properties Distinguish LQ-Type Calmodulin-Binding Domains in Cyclic Nucleotide-Gated Channels

Journal

BIOCHEMISTRY
Volume 50, Issue 15, Pages 3221-3228

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/bi200115m

Keywords

-

Funding

  1. Deutsche Forschungsgemeinschaft, Germany [MO 1384/1]

Ask authors/readers for more resources

Cyclic nucleotide-gated (CNG) channels operate as transduction channels in photoreceptors and olfactory receptor neurons. Direct binding of cGMP or cAMP opens these channels which conduct a mixture of monovalent cations and Ca2+. Upon activation, CNG channels generate intracellular Ca2+ signals that play pivotal roles in the transduction cascades of the visual and olfactory systems. Channel activity is controlled by negative feedback mechanisms that involve Ca2+-calmodulin, for which all CNG channels possess binding sites. Here we compare the binding properties of the two LQ-type calmodulin binding sites, both of which are thought to be involved in channel regulation. They reside on the isoforms CNGB1 and CNGA4. The CNGB1 subunit is present in rod photoreceptors and olfactory receptor neurons. The CNGA4 subunit is only expressed in olfactory receptor neurons, and there are conflicting results as to its role in calmodulin-mediated feedback inhibition. We examined the interaction of Ca2+-calmodulin with two recombinant proteins that encompass either of the two LQ sites. Comparing binding properties, we found that the LQ site of CNGB1 binds Ca2+-calmodulin at 10-fold lower Ca2+ levels than the LQ site of CNGA4. Our data provide biochemical evidence against a contribution of CNGA4 to feedback inhibition. In accordance with previous work on photoreceptor CNG channels, our results indicate that feedback control is the exclusive role of the B-subunits in photoreceptors and olfactory receptor neurons.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biophysics

A general mathematical model for the in vitro assembly dynamics of intermediate filament proteins

Norbert Muecke, Tomasz Wocjan, Marine Jacquier, Harald Herrmann, Stephanie Portet

Summary: This study investigates the impact of flexibility on the assembly kinetics of intermediate filament proteins and reveals a complex relationship between flexibility and assembly rate. Additionally, it demonstrates that differences in individual amino acid sequences significantly affect the assembly rates.

BIOPHYSICAL JOURNAL (2022)

Article Chemistry, Multidisciplinary

A bioinspired glycopolymer for capturing membrane proteins in native-like lipid-bilayer nanodiscs

Bartholomaus Danielczak, Marie Rasche, Julia Lenz, Eugenio Perez Patallo, Sophie Weyrauch, Florian Mahler, Michael Tope Agbadaola, Annette Meister, Jonathan Oyebamiji Babalola, Carolyn Vargas, Cenek Kolar, Sandro Keller

Summary: Glyco-DIBMA, a novel glycopolymer, demonstrates enhanced efficiency in solubilizing lipid vesicles to form nanodiscs under near-physiological conditions, maintaining a bilayer structure and enabling rapid lipid exchange. Experimental results have shown the superior performance of Glyco-DIBMA in extracting cellular membrane proteins and analytical applications.

NANOSCALE (2022)

Article Biochemistry & Molecular Biology

ALT-FISH quantifies alternative lengthening of telomeres activity by imaging of single-stranded repeats

Lukas Frank, Anne Rademacher, Norbert Muecke, Stephan M. Tirier, Emma Koeleman, Caroline Knotz, Sabrina Schumacher, Sabine A. Stainczyk, Frank Westermann, Stefan Froehling, Priya Chudasama, Karsten Rippe

Summary: This study introduces a new method called ALT-FISH to quantitate ALT activity in single cells by detecting the accumulation of single-stranded telomeric DNA and RNA. The method successfully identified ALT in cancer cell lines and primary tissue sections from different tumor entities, and it is suitable for high-throughput applications, which will facilitate screening for ALT-specific drugs.

NUCLEIC ACIDS RESEARCH (2022)

Article Biochemistry & Molecular Biology

Transcription activation is enhanced by multivalent interactions independent of phase separation

Jorge Trojanowski, Lukas Frank, Anne Rademacher, Norbert Muecke, Pranas Grigaitis, Karsten Rippe

Summary: This study investigates the transcriptional activation process by comparing synthetic transcription factors (TFs) at a reporter gene array. The results show that the physicochemical properties of the activation domain (AD) can control TF assembly at chromatin. It was found that while the propensity for phase separation and activation strength of the AD were correlated, the actual formation of liquid-like TF droplets had a neutral or inhibitory effect on transcription activation. The study concludes that multivalent AD-mediated interactions enhance transcription activation capacity by increasing the TF's residence time in the chromatin-bound state and facilitating the recruitment of coactivators, independent of phase separation.

MOLECULAR CELL (2022)

Article Biochemistry & Molecular Biology

Membrane Activity of LL-37 Derived Antimicrobial Peptides against Enterococcus hirae: Superiority of SAAP-148 over OP-145

Paulina Piller, Heimo Wolinski, Robert A. Cordfunke, Jan Wouter Drijfhout, Sandro Keller, Karl Lohner, Nermina Malanovic

Summary: The development of antimicrobial agents against multidrug-resistant bacteria is crucial in the medical field. This study found that SAAP-148, an antimicrobial peptide, showed higher efficiency in killing bacteria and had stronger effects on membranes at both cellular and molecular levels compared to OP-145.

BIOMOLECULES (2022)

Article Biophysics

Dual-wavelength stopped-flow analysis of the lateral and longitudinal assembly kinetics of vimentin

Lovis Schween, Norbert Muecke, Stephanie Portet, Wolfgang H. Goldmann, Harald Herrmann, Ben Fabry

Summary: Vimentin is a highly charged intermediate filament protein that undergoes lateral and longitudinal assembly processes, which are accelerated by increasing salt concentration.

BIOPHYSICAL JOURNAL (2022)

Article Plant Sciences

Botrytis hypersensitive response inducing protein 1 triggers noncanonical PTI to induce plant cell death

Tanja Jeblick, Thomas Leisen, Christina E. Steidele, Isabell Albert, Jonas Mueller, Sabrina Kaiser, Florian Mahler, Frederik Sommer, Sandro Keller, Ralph Hueckelhoven, Matthias Hahn, David Scheuring

Summary: The secreted Botrytis protein hypersensitive response inducing protein 1 activates plant defense to kill plant cells. According to their lifestyle, plant pathogens are divided into biotrophic and necrotrophic organisms. However, the precise role of these proteins during infection is unknown.

PLANT PHYSIOLOGY (2023)

Article Chemistry, Analytical

Austria;;

Jasmin Baron, Lena Bauernhofer, Sean R. A. Devenish, Sebastian Fiedler, Alison Ilsley, Sabrina Riedl, Dagmar Zweytick, David Glueck, Ariane Pessentheiner, Gregory Durand, Sandro Keller

Summary: Microfluidic diffusional sizing (MDS) is a method for determining the size and interactions of biomolecules and nanoparticles. Researchers have introduced fluorescent universal lipid labeling for MDS (FULL-MDS), which can determine particle size in unpurified samples. FULL-MDS is not only suitable for cell extracts but also faster, cheaper, and simpler than existing labeling schemes for synthetic nanodiscs.

ANALYTICAL CHEMISTRY (2022)

Article Biochemistry & Molecular Biology

Zwitterionic fluorinated detergents: From design to membrane protein applications

Marine Soulie, Anais Deletraz, Moheddine Wehbie, Florian Mahler, Ilham Bouchemal, Aline Le Roy, Isabelle Petit-Hartlein, Sandro Keller, Annette Meister, Eva Pebay-Peyroula, Cecile Breyton, Christine Ebel, Gregory Durand

Summary: We synthesized zwitterionic sulfobetaine (SB) and dimethylamine oxide (AO) detergents with perfluorohexyl and perfluoropentyl groups and evaluated their properties. The critical micellar concentrations (CMCs) of these detergents were measured in the millimolar range. The morphologies of the aggregates were characterized, and it was found that the perfluoropentyl derivatives formed smaller micelles compared to the perfluorohexyl derivatives. The SB detergents showed superior performance in solubilizing lipid vesicles and stabilizing membrane proteins.

BIOCHIMIE (2023)

Article Biochemistry & Molecular Biology

Cryo-Electron Microscopy Snapshots of Eukaryotic Membrane Proteins in Native Lipid-Bilayer Nanodiscs

Kevin Janson, Fotis L. Kyrilis, Christian Tueting, Marie Alfes, Manabendra Das, Toni K. Trager, Carla Schmidt, Farzad Hamdi, Carolyn Vargas, Sandro Keller, Annette Meister, Panagiotis L. Kastritis

Summary: New technologies for purifying membrane-bound protein complexes in combination with cryo-electron microscopy have allowed the exploration of complexes under native conditions. The use of polymer-encapsulated nanodiscs enables the study of membrane proteins while retaining protein-protein and protein-lipid interactions. This study demonstrates that combining biochemical enrichment protocols with polymer-based nanodiscs improves the quality of recovered endogenous membrane-protein complexes, providing unprecedented opportunities for a deeper understanding of eukaryotic membrane proteomes.

BIOMACROMOLECULES (2022)

Article Biochemistry & Molecular Biology

Lipid exchange among electroneutral Sulfo-DIBMA nanodiscs is independent of ion concentration

Loretta Eggenreich, Carolyn Vargas, Cenek Kolar, Sandro Keller

Summary: Polymer-encapsulated nanodiscs allow the study of membrane proteins in a natural lipid-bilayer environment with the ability to exchange lipids. Electroneutral nanodisc-forming polymers have been introduced to avoid interference with protein-lipid interactions and analysis techniques. In this study, time-resolved Forster resonance energy transfer was used to investigate lipid exchange among nanodiscs formed by the electroneutral polymer Sulfo-DIBMA. The presence of monovalent and divalent cations did not influence lipid exchange among Sulfo-DIBMA nanodiscs, demonstrating their robustness against varying ion concentrations.

BIOLOGICAL CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

Interaction of detergent with complex mimics of bacterial membranes

Nadine Angerer, Paulina Piller, Enrico F. Semeraro, Sandro Keller, Georg Pabst

Summary: Detergents are important for extracting membrane proteins, and this research investigated the solubilization of multi-component lipid membranes using a commonly used detergent. The results showed that the composition complexity of the lipids affects the solubilization behavior of the membranes.

BIOPHYSICAL CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

Effect of Cholesterol on the Structure and Composition of Glyco- DIBMA Lipid Particles

Alessandra Luchini, Julia Lenz, Andreas Haahr Larsen, Sandro Keller

Summary: Researchers have introduced new co-polymers to produce polymer-lipid particles with nanodisc structure, which can stabilize membrane proteins and allow their characterization. These particles can also be used to directly extract membrane proteins from native membranes. The size and shape of the particles can be controlled by adjusting the polymer/lipid ratio, making them suitable for studying different membrane proteins.

LANGMUIR (2023)

Article Polymer Science

Synthesis of well-defined methacrylate copolymers and their use for stabilizing membrane proteins

Valentin Monjal, Alexis Moreno, David Glueck, Sandro Keller, Pierre Guillet, Gregory Durand

Summary: In this study, a series of amphiphilic methacrylate copolymers were synthesized. By varying the monomer ratio, membrane proteins were extracted and provided with a stabilizing environment.

JOURNAL OF POLYMER SCIENCE (2023)

Article Multidisciplinary Sciences

Allosteric modulation of integral protein activity by differential stress in asymmetric membranes

Paulina Piller, Enrico F. Semeraro, Gerald N. Rechberger, Sandro Keller, Georg Pabst

Summary: The activity of integral membrane proteins is influenced by the properties of the lipid matrix. In this study, the researchers investigated the effect of transbilayer asymmetry on the activity of the membrane-embedded enzyme OmpLA. They found that increasing membrane asymmetry resulted in a decrease in the enzyme's activity. This study highlights the importance of membrane asymmetry in controlling membrane-protein activity.

PNAS NEXUS (2023)

No Data Available