Review
Neurosciences
Shenglan Hu, Jieqiong Tan, Lixia Qin, Lingling Lv, Weiqian Yan, Hainan Zhang, BeiSha Tang, Chunyu Wang
Summary: Parkinson's disease is a neurodegenerative disorder characterized by the progressive death of dopamine neurons, with mutations in PD-related genes playing a role in neuronal pathogenesis. Molecular chaperones/co-chaperones interact with PD-related proteins to modulate their function and potentially provide new therapeutic targets for the disease progression.
NEUROBIOLOGY OF DISEASE
(2021)
Article
Medicine, Research & Experimental
Sinyeon Kim, Jin Gyu Choi, Se Woong Kim, Sang Cheol Park, Yu-ra Kang, Dong Seok Park, Miwon Son, Choong Hwan Lee
Summary: The herbal formula MT101-5 has been found to have neuroprotective effects against alpha-synuclein-induced cytotoxicity, improving behavioral deficits and loss of dopaminergic neurons in a mouse model of Parkinson's disease. It is believed that MT101-5 achieves this through changes in mitochondrial biogenesis, electron transport, chaperones, and proteasomes. These findings suggest that MT101-5 could be a potential pharmaceutical agent for preventing or improving Parkinson's disease.
BIOMEDICINE & PHARMACOTHERAPY
(2022)
Review
Biochemistry & Molecular Biology
Jose angel Martinez-Menarguez, Emma Martinez-Alonso, Mireia Cara-Esteban, Monica Tomas
Summary: Parkinson's disease is the second most common neurodegenerative disease characterized by the loss of dopaminergic neurons and the formation of Lewy bodies in neurons. Rab1 is a key protein involved in maintaining cellular function and signaling pathways, directly linked to the pathogenesis of PD and other neurodegenerative diseases. This GTPase is considered a potential candidate for therapeutic strategies.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Khushboo Rani, Arumay Pal, Bharat Gurnani, Pratibha Agarwala, Dibyendu K. Sasmal, Neha Jain
Summary: Amyloid formation due to protein misfolding, particularly in the case of a-synuclein, is associated with Parkinson's disease and kidney-related disorders. This study reveals the ability of β2-microglobulin to mitigate amyloid formation by a-synuclein and drive its aggregation into non-toxic aggregates.
JOURNAL OF MOLECULAR BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Emilie Tresse, Joana Marturia-Navarro, Wei Qi Guinevere Sew, Marina Cisquella-Serra, Elham Jaberi, Lluis Riera-Ponsati, Natasha Fauerby, Erling Hu, Oliver Kretz, Susana Aznar, Shohreh Issazadeh-Navikas
Summary: Damaged mtDNA plays a role in the onset and spread of sporadic Parkinson's disease with dementia, involving oxidative stress and the activation of TLR4/9 pathways.
MOLECULAR PSYCHIATRY
(2023)
Article
Biochemistry & Molecular Biology
Andreas Steiner, Sebastien Favre, Maximilian Mack, Annika Hausharter, Benjamin Pillet, Jutta Hafner, Valentin Mitterer, Dieter Kressler, Brigitte Pertschy, Ingrid Zierler
Summary: The ribosome is assembled in the nucleus, and newly synthesized ribosomal proteins need to travel from the cytoplasm into the nucleus. This study reveals two mechanisms by which the small subunit ribosomal protein Rps2 is imported into the nucleus, involving an internal region (amino acids 76-145) and an N-terminal region (amino acids 10-28), which interact with importin-β Pse1 and Tsr4, respectively. This study uncovers new nuclear import signals for ribosomal proteins, demonstrating the versatility of the mechanisms coordinating their nuclear import.
Article
Neurosciences
Iris Lindberg, Zhan Shu, Hoa Lam, Michael Helwig, Nur Yucer, Alexander Laperle, Clive N. Svendsen, Donato A. Di Monte, Nigel T. Maidment
Summary: The study demonstrates that proSAAS chaperone is effective in reducing motor deficits and neuronal damage caused by aSyn in Parkinson's disease, and can block the transsynaptic spread of aSyn.
JOURNAL OF PARKINSONS DISEASE
(2022)
Article
Neurosciences
Hengxing Zheng, Zhenhua Xie, Xuran Zhang, Jian Mao, Mengyuan Wang, Sijia Wei, Yiwen Fu, Hong Zheng, Ying He, Hui Chen, Yan Xu
Summary: This study examined the aggregation status, localization, and degradation characteristics of a-syn and p-a-syn in plasma exosomes from PD patients and healthy controls. Results indicated poor solubility of a-syn and p-a-syn after protease K treatment, with aggregates found inside and on the membrane surface of plasma exosomes. The ratios of oligomeric a-syn/total a-syn and oligomeric p-a-syn/total p-a-syn in plasma exosomes showed moderate utility in assisting PD diagnosis.
Article
Food Science & Technology
Maria Izco, Ariane Vettorazzi, Raquel Forcen, Javier Blesa, Maria de Toro, Natalia Alvarez-Herrera, J. Mark Cooper, Elena Gonzalez-Penas, Adela Lopez de Cerain, Lydia Alvarez-Erviti
Summary: Research indicates that oral exposure to low levels of the mycotoxin ochratoxin A (OTA) can lead to pathological changes associated with Parkinson's disease (PD) in mice, such as loss of dopaminergic innervation and cell dysfunction. These findings suggest a potential role of OTA in the pathogenesis of PD.
FOOD AND CHEMICAL TOXICOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Mario Meloni, Cristina Agliardi, Franca Rosa Guerini, Francesca Lea Saibene, Anna Vera Milner, Milena Zanzottera, Elisabetta Bolognesi, Monica Puligheddu, Michela Figorilli, Jorge Navarro, Mario Clerici
Summary: REM sleep behavior disorder (RBD) is more closely related to synucleinopathies in Parkinson's Disease (PD) compared to other neurodegenerative disorders. This study explores the potential biomarkers for RBD using neural-derived extracellular vesicles (NDEVs) in serum. The findings suggest that serum concentrations of NDEVs' oligomeric a-Syn and SNARE complex components could serve as reliable biomarkers for the RBD-specific PD endophenotype.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Geriatrics & Gerontology
Roman Vozdek, Peter P. Pramstaller, Andrew A. Hicks
Summary: This study established a model of PD in dopaminergic neurons and identified modulators that may represent new potential therapeutic targets for neurodegenerative proteopathies and other aging-related diseases.
FRONTIERS IN AGING NEUROSCIENCE
(2022)
Article
Biochemistry & Molecular Biology
Hua Gao, Dan Wang, Yu-Ling Wang, Jie-Ping Mao, Sen Jiang, Xin-Ling Yang
Summary: This study demonstrates that PPX improves motor behavior in PD rats by mediating inflammatory response and regulating the Nurr1/NF-αB signaling pathway, rescuing 6-OHDA-induced TH loss.
MOLECULAR BIOLOGY REPORTS
(2021)
Article
Genetics & Heredity
Muhammad Aslam, Nirosiya Kandasamy, Anwar Ullah, Nagarajan Paramasivam, Mehmet Ali Ozturk, Saima Naureen, Abida Arshad, Mazhar Badshah, Kafaitullah Khan, Muhammad Wajid, Rashda Abbasi, Muhammad Ilyas, Roland Eils, Matthias Schlesner, Rebecca C. Wade, Nafees Ahmad, Jakob von Engelhardt
Summary: Rare variants in the GBA1 gene are common genetic risk factors for alpha synucleinopathy, and in this study, rare genetic variants of DNAJB6 and PSAP were identified as additional factors possibly influencing PD risk in families with PD-associated GBA1 variants. The altered functions of variant DNAJB6 and PSAP proteins in cellular alpha-synuclein homeostasis suggest a possible association with PD, and the occurrence of second hits or additional rare variants in PD families with GBA1 variants has implications for genetic counseling and treatment selection.
NPJ GENOMIC MEDICINE
(2021)
Article
Cell Biology
Monica Tomas, Emma Martinez-Alonso, Narcisa Martinez-Martinez, Mireia Cara-Esteban, Jose A. Martinez-Menarguez
Summary: Fragmentation of the Golgi ribbon is a common feature of Parkinson's disease and other neurodegenerative diseases, possibly caused by alterations in regulatory proteins. While most information is derived from cellular and animal experimental models, further research on human tissue is needed to better understand the mechanisms underlying these diseases.
HISTOLOGY AND HISTOPATHOLOGY
(2021)
Review
Neurosciences
E. Giusto, T. A. Yacoubian, E. Greggio, L. Civiero
Summary: 14-3-3 proteins are a family of highly conserved acidic proteins that regulate the activity, localization, and protein-protein interactions of client partners by recognizing specific phospho-sequences. They are associated with the pathogenesis of diseases like Parkinson's disease, and their interaction with key proteins involved in PD suggests potential neuroprotective effects. Modulating 14-3-3 interactome with small molecules may be a promising strategy for drug discovery in the future.
NPJ PARKINSONS DISEASE
(2021)
Article
Biochemistry & Molecular Biology
Zhiqiang Zhang, Ines Cottignie, Griet Van Zeebroeck, Johan M. Thevelein
Summary: Multiple starvation-induced, high-affinity nutrient transporters in yeast act as receptors for activation of the PKA pathway upon re-addition of their substrates. These transceptors physically interact with the PKA-related Sch9 protein kinase, suggesting a nutrient transceptor-Sch9-TOR axis that may be affected by environmental challenges.
BIOCHEMICAL JOURNAL
(2021)
Article
Chemistry, Multidisciplinary
Soren Kuypers, Nick Smisdom, Isabel Pintelon, Jean-Pierre Timmermans, Marcel Ameloot, Luc Michiels, Jelle Hendrix, Baharak Hosseinkhani
Summary: EVs are biological nanoparticles crucial for cell-to-cell communication and disease diagnosis. However, methods to quantify EV biomarkers have been lacking. This study presents a novel single-particle approach using multicolor single-molecule burst analysis microscopy to detect multiple biomarkers on single EVs, allowing for diagnostic profiling and quality assessment of EV preparations.
Article
Biotechnology & Applied Microbiology
Caroline L. Perez, Thais S. Milessi, Juliana P. Sandri, Maria R. Foulquie-Moreno, Roberto C. Giordano, Johan M. Thevelein, Raquel de Lima Camargo Giordano, Teresa C. Zangirolami
Summary: Efficient fermentation of glucose and xylose is essential for second generation ethanol production, with improved ethanol tolerance in yeasts and innovative solutions to increase sugar concentration in hydrolysates being the main challenges.
BIOCHEMICAL ENGINEERING JOURNAL
(2021)
Article
Biotechnology & Applied Microbiology
Gert Vanmarcke, Mekonnen M. Demeke, Maria R. Foulquie-Moreno, Johan M. Thevelein
Summary: The study investigated the inhibition of ethanol fermentation by two industrial second-generation yeast strains in five lignocellulose hydrolysates. The results showed that the presence of furfural at industrially relevant concentrations caused partial inhibition of glucose and xylose consumption. Furthermore, the addition of 3 or 6 g/L furfural significantly reduced the ethanol titer obtained with strain MD4 in all evaluated hydrolysates.
BIOTECHNOLOGY FOR BIOFUELS
(2021)
Article
Pharmacology & Pharmacy
Chetan P. Kulkarni, Johan M. Thevelein, Walter Luyten
Summary: The study revealed differences in SGLT1-mediated glucose transport and its regulation in Caco-2 cells as compared to in vivo situations. At lower glucose concentrations, SGLT1 plays a larger role in glucose transport in Caco-2 cell monolayers, suggesting contributions from other transporters at higher concentrations. Additionally, Caco-2 cells may lack certain kinases and functional beta(2)-adrenoceptors, explaining the differences in glucose transport regulation observed in the study.
EUROPEAN JOURNAL OF PHARMACOLOGY
(2021)
Article
Microbiology
Quinten Deparis, Jorge Duitama, Maria R. Foulquie-Moreno, Johan M. Thevelein
Summary: Mutations in tRNAs play a crucial role in evolution to overcome specific tRNA deficiencies, and stress conditions may have been a driving force for the selection of anticodon-switching mutations in tRNAs. The introduction of a low number of causative elements by whole-genome transformation may be advantageous for improving industrial yeast strains.
Article
Multidisciplinary Sciences
Danai Laskaratou, Guillermo Solis Fernandez, Quinten Coucke, Eduard Fron, Susana Rocha, Johan Hofkens, Jelle Hendrix, Hideaki Mizuno
Summary: FADED is a novel method for measuring FRET based on anisotropy rather than proximity, allowing for quantification of the relative angle between donor and acceptor. By suppressing donor bleed-through, purer sensitized acceptor anisotropy measurements can be obtained, making it suitable for live cell imaging.
NATURE COMMUNICATIONS
(2021)
Review
Biology
Eitan Lerner, Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Scott C. Blanchard, Richard Boerner, Hoi Sung Chung, Thorben Cordes, Timothy D. Craggs, Ashok A. Deniz, Jiajia Diao, Jingyi Fei, Ruben L. Gonzalez, Irina Gopich, Taekjip Ha, Christian A. Hanke, Gilad Haran, Nikos S. Hatzakis, Sungchul Hohng, Seok-Cheol Hong, Thorsten Hugel, Antonino Ingargiola, Chirlmin Joo, Achillefs N. Kapanidis, Harold D. Kim, Ted Laurence, Nam Ki Lee, Tae-Hee Lee, Edward A. Lemke, Emmanuel Margeat, Jens Michaelis, Xavier Michalet, Sua Myong, Daniel Nettels, Thomas-Otavio Peulen, Evelyn Ploetz, Yair Razvag, Nicole C. Robb, Benjamin Schuler, Hamid Soleimaninejad, Chun Tang, Reza Vafabakhsh, Don C. Lamb, Claus A. M. Seidel, Shimon Weiss
Summary: Single-molecule FRET (smFRET) has become a mainstream technique for studying biomolecular structural dynamics, with significant progress being made in sample preparation, measurement procedures, data analysis, algorithms, and documentation. Efforts have been made to streamline experiments and analyze results for obtaining quantitative information. Open science practices are strongly encouraged for further progress in this field.
Article
Biochemistry & Molecular Biology
Daniel Scholl, Maud Sigoillot, Marie Overtus, Rafael Colomer Martinez, Chloe Martens, Yiting Wang, Els Pardon, Toon Laeremans, Abel Garcia-Pino, Jan Steyaert, David N. Sheppard, Jelle Hendrix, Cedric Govaerts
Summary: CFTR's NBD1 exhibits different conformations regulated by ATP binding, which can easily transition under destabilizing conditions caused by disease mutations, leading to protein degradation.
NATURE CHEMICAL BIOLOGY
(2021)
Article
Green & Sustainable Science & Technology
Caroline L. Perez, Lais P. R. da C. Pereira, Thais S. Milessi, Juliana P. Sandri, Mekonnen Demeke, Maria R. Foulquie-Moreno, Johan M. Thevelein, Teresa C. Zangirolami
Summary: A strategy based on strain evaluation and integration with 1G ethanol production was used to develop a robust and scalable process for 2G ethanol production. The study found that using mixed medium of crude bagasse hydrolysate and molasses achieved high ethanol concentrations and long-term stability.
Article
Biochemistry & Molecular Biology
Marija Stojiljkovic, Arne Claes, Quinten Deparis, Mekonnen M. Demeke, Ana Subotic, Maria R. Foulquie-Moreno, Johan M. Thevelein
Summary: Whole-genome transformation can generate strains with superior traits by introducing DNA from other strains. This study successfully obtained stable transformants with acetic acid tolerance by transforming a haploid S. cerevisiae strain with DNA from a tolerant strain, and identified the main causative SNP as c.[805G -> T] mutation in the SNF4 gene.
MOLECULAR AND CELLULAR BIOLOGY
(2022)
Article
Polymer Science
Raiane C. Soares, Teresa C. Zangirolami, Raquel L. C. Giordano, Mekonnen M. Demeke, Johan M. Thevelein, Thais S. Milessi
Summary: This study explores the application of Ca-alginate hybrid gels in immobilizing recombinant yeast to enhance its tolerance to inhibitors. The results demonstrate that the use of the hybrid gel improves yeast performance in the presence of high concentrations of acetic acid and in crude hydrolysate.
Article
Biotechnology & Applied Microbiology
Ben Souffriau, Sylvester Holt, Arne Hagman, Stijn De Graeve, Philippe Malcorps, Maria R. Foulquie-Moreno, Johan M. Thevelein
Summary: This study investigates the inhibition effect caused by high CO2 pressure and identifies a yeast strain with superior tolerance to this effect. The study also identifies the gene responsible for the tolerance and demonstrates the potential of genetic modification or marker-assisted breeding in creating yeast strains with improved flavor production under high CO2 pressure.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Sara Deleu, Kaline Arnauts, Lowie Deprez, Kathleen Machiels, Marc Ferrante, Geert R. B. Huys, Johan M. M. Thevelein, Jeroen Raes, Severine Vermeire
Summary: Short-chain fatty acids and their bacterial producers are gaining increasing attention in inflammatory bowel diseases. Acetate, although less studied compared to butyrate, shows potential in being less toxic to epithelial cells, stimulating butyrate-producing bacteria, and having anti-inflammatory and barrier-protective properties. In a study using organoid-based monolayer cultures from ulcerative colitis patients, high acetate concentrations were found to improve epithelial resistance, decrease pro-inflammatory markers, and enhance barrier gene expression. These findings suggest that acetate may offer a promising approach for managing barrier defects and inflammation in IBD.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Chemistry, Multidisciplinary
Alessia Pancaro, Michal Szymonik, Panagiotis G. Georgiou, Alexander N. Baker, Marc Walker, Peter Adriaensens, Jelle Hendrix, Matthew Gibson, Inge Nelissen
Summary: Gold nanorods are a promising platform for nanoplasmonic biosensing, but their binding responses in complex biological fluids are significantly affected by the formation of biocorona. It is crucial to tune the exact nature of the biocorona to ensure accurate sensing results.