Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt

(2013) Matthew Scotch et al.   BMC GENOMICS

A One-Step RT-PCR Array for Detection and Differentiation of Zoonotic Influenza Viruses H5N1, H9N2, and H1N1

(2013) Yao Chen et al.   JOURNAL OF CLINICAL LABORATORY ANALYSIS

A Single Amino Acid at the Hemagglutinin Cleavage Site Contributes to the Pathogenicity but Not the Transmission of Egyptian Highly Pathogenic H5N1 Influenza Virus in Chickens

(2013) S.-W. Yoon et al.   JOURNAL OF VIROLOGY

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

(2013) N. R. Faria et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Different Environmental Drivers of Highly Pathogenic Avian Influenza H5N1 Outbreaks in Poultry and Wild Birds

(2013) Yali Si et al.   PLoS One

Environmental Predictors of Seasonal Influenza Epidemics across Temperate and Tropical Climates

(2013) James D. Tamerius et al.   PLoS Pathogens

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylodynamics of H5N1 avian influenza virus in Indonesia

(2012) TOMMY TSAN-YUK LAM et al.   MOLECULAR ECOLOGY

Ecological Determinants of Highly Pathogenic Avian Influenza (H5N1) Outbreaks in Bangladesh

(2012) Syed S. U. Ahmed et al.   PLoS One

Improving Risk Models for Avian Influenza: The Role of Intensive Poultry Farming and Flooded Land during the 2004 Thailand Epidemic

(2012) Thomas P. Van Boeckel et al.   PLoS One

An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: epidemiology and control challenges

(2011) E. M. ABDELWHAB et al.   EPIDEMIOLOGY AND INFECTION

Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature

(2011)   Influenza and Other Respiratory Viruses

Identifying risk factors of highly pathogenic avian influenza (H5N1 subtype) in Indonesia

(2011) Leo Loth et al.   PREVENTIVE VETERINARY MEDICINE

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

(2011) R. J. F. Ypma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

BART: Bayesian additive regression trees

(2010) Hugh A. Chipman et al.   Annals of Applied Statistics

Circulation of Avian Influenza H5N1 in Live Bird Markets in Egypt

(2010) E. M. Abdelwhab et al.   AVIAN DISEASES

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Estimation of Transmission Parameters of H5N1 Avian Influenza Virus in Chickens

(2009) Annemarie Bouma et al.   PLoS Pathogens

Mapping H5N1 highly pathogenic avian influenza risk in Southeast Asia

(2008) M. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA