Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

EXPERIMENTAL RABIES VIRUS INFECTION OF BIG BROWN BATS (EPTESICUS FUSCUS)

(2013) Felix R. Jackson et al.   JOURNAL OF WILDLIFE DISEASES

Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication

(2012) L. A. Weinert et al.   Biology Letters

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rates of Viral Evolution Are Linked to Host Geography in Bat Rabies

(2012) Daniel G. Streicker et al.   PLoS Pathogens

Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline

(2011) Ceiridwen J. Edwards et al.   CURRENT BIOLOGY

Rabies surveillance in the United States during 2010

(2011) Jesse D. Blanton et al.   JAVMA-JOURNAL OF THE AMERICAN VETERINARY MEDICAL ASSOCIATION

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Toward a quantitative understanding of viral phylogeography

(2011) Nuno Rodrigues Faria et al.   Current Opinion in Virology

Host Phylogeny Determines Viral Persistence and Replication in Novel Hosts

(2011) Ben Longdon et al.   PLoS Pathogens

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

The role of swine as “mixing vessel” for interspecies transmission of the influenza A subtype H1N1: A simultaneous Bayesian inference of phylogeny and ancestral hosts

(2010) Johanna Haß et al.   INFECTION GENETICS AND EVOLUTION

Impact of CCR5delta32 Host Genetic Background and Disease Progression on HIV-1 Intrahost Evolutionary Processes: Efficient Hypothesis Testing through Hierarchical Phylogenetic Models

(2010) D. Edo-Matas et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages

(2010) B. Shapiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus

(2010) Chiraz Talbi et al.   PLoS Pathogens

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

(2009) J. D. O'Brien et al.   MOLECULAR BIOLOGY AND EVOLUTION

Epidemic Dynamics at the Human-Animal Interface

(2009) J. O. Lloyd-Smith et al.   SCIENCE

Transmission Dynamics and Prospects for the Elimination of Canine Rabies

(2009) Katie Hampson et al.   PLOS BIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Emerging infections: a perpetual challenge

(2008) David M Morens et al.   LANCET INFECTIOUS DISEASES

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

(2008) C. R. Parrish et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION