Nucleic Acid Fluorescent Probes for Biological Sensing

Multiplexed Biological Detection: Fluorescence Upconversion Microbarcodes for Multiplexed Biological Detection: Nucleic Acid Encoding (Adv. Mater. 33/2011)

(2012) Fan Zhang et al.   ADVANCED MATERIALS

In Situ, Real-Time Monitoring of the 3′ to 5′ Exonucleases Secreted by Living Cells

(2012) Xin Su et al.   ANALYTICAL CHEMISTRY

Gold Nanoparticles in Chemical and Biological Sensing

(2012) Krishnendu Saha et al.   CHEMICAL REVIEWS

Amplified Fluorescence Aptamer-Based Sensors Using Exonuclease III for the Regeneration of the Analyte

(2012) Xiaoqing Liu et al.   CHEMISTRY-A EUROPEAN JOURNAL

Branchpoint Expansion in a Fully Complementary Three-Way DNA Junction

(2012) Tara Sabir et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cationic Conjugated Polyelectrolytes-Triggered Conformational Change of Molecular Beacon Aptamer for Highly Sensitive and Selective Potassium Ion Detection

(2012) Boram Kim et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Probing Y-shaped DNA structure with time-resolved FRET

(2012) Subhasish Chatterjee et al.   Nanoscale

A universal mismatch-directed signal amplification platform for ultra-selective and sensitive DNA detection under mild isothermal conditions

(2012) Xianjin Xiao et al.   Chemical Science

Label-free fluorescent detection of copper(ii) using DNA-templated highly luminescent silver nanoclusters

(2011) Min Zhang et al.   ANALYST

Fluorescence polarization biosensor based on an aptamer enzymatic cleavage protection strategy

(2011) Anthony Kidd et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

On-Chip Transduction of Nucleic Acid Hybridization Using Spatial Profiles of Immobilized Quantum Dots and Fluorescence Resonance Energy Transfer

(2011) Anthony J. Tavares et al.   ANALYTICAL CHEMISTRY

Aptamer Biosensor Based on Fluorescence Resonance Energy Transfer from Upconverting Phosphors to Carbon Nanoparticles for Thrombin Detection in Human Plasma

(2011) Yuhui Wang et al.   ANALYTICAL CHEMISTRY

One-Step Homogeneous Protein Detection Based on Aptamer Probe and Fluorescence Cross-Correlation Spectroscopy

(2011) Xiaoming Zhou et al.   ANALYTICAL CHEMISTRY

Fluorescence Imaging of Influenza H1N1 mRNA in Living Infected Cells Using Single-Chromophore FIT-PNA

(2011) Susann Kummer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Molecular imaging of a cancer-targeting theragnostics probe using a nucleolin aptamer- and microRNA-221 molecular beacon-conjugated nanoparticle

(2011) Jin Kyeoung Kim et al.   BIOMATERIALS

Design, synthesis and in vitro evaluation of novel bivalent S-adenosylmethionine analogues

(2011) Catherine Joce et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

A transformer of molecular beacon for sensitive and real-time detection of phosphatases with effective inhibition of the false positive signals

(2011) Chen Zhang et al.   BIOSENSORS & BIOELECTRONICS

DNA–Ag nanoclusters as fluorescence probe for turn-on aptamer sensor of small molecules

(2011) Zhixue Zhou et al.   BIOSENSORS & BIOELECTRONICS

Discrimination of the false-positive signals of molecular beacons by combination of heat inactivation and using single walled carbon nanotubes

(2011) Xin Su et al.   BIOSENSORS & BIOELECTRONICS

The homogeneous fluorescence anisotropic sensing of salivary lysozyme using the 6-carboxyfluorescein-labeled DNA aptamer

(2011) Mingjian Zou et al.   BIOSENSORS & BIOELECTRONICS

A label-free DNA reduced graphene oxide-based fluorescent sensor for highly sensitive and selective detection of hemin

(2011) Yan Shi et al.   CHEMICAL COMMUNICATIONS

DNA-templated release of functional molecules with an azide-reduction-triggered immolative linker

(2011) Katarzyna Gorska et al.   CHEMICAL COMMUNICATIONS

Ultra-selective and sensitive DNA detection by a universal apurinic/apyrimidinic probe-based endonuclease IV signal amplification system

(2011) Xianjin Xiao et al.   CHEMICAL COMMUNICATIONS

Fluorescent DNA-based enzyme sensors

(2011) Nan Dai et al.   CHEMICAL SOCIETY REVIEWS

Biological and chemical sensors based on graphene materials

(2011) Yuxin Liu et al.   CHEMICAL SOCIETY REVIEWS

RNA dimerization monitored by fluorescence correlation spectroscopy

(2011) Arne Werner et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Self-Assembly of Polydeoxyadenylic Acid Studied at the Single-Molecule Level

(2011) Sooyeon Kim et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Probing the Charge-Transfer Dynamics in DNA at the Single-Molecule Level

(2011) Kiyohiko Kawai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Selective Enhancement of Nucleases by Polyvalent DNA-Functionalized Gold Nanoparticles

(2011) Andrew E. Prigodich et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Polyvalent Nucleic Acid Nanostructures

(2011) Joshua I. Cutler et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

pH-Induced Intramolecular Folding Dynamics of i-Motif DNA

(2011) Jungkweon Choi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Chemiluminescent and Chemiluminescence Resonance Energy Transfer (CRET) Detection of DNA, Metal Ions, and Aptamer–Substrate Complexes Using Hemin/G-Quadruplexes and CdSe/ZnS Quantum Dots

(2011) Ronit Freeman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Dual-color fluorescence cross-correlation spectroscopy on a planar optofluidic chip

(2011) A. Chen et al.   LAB ON A CHIP

Activatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alteration

(2011) H. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid fluorescence imaging of miRNAs in human cells using templated Staudinger reaction

(2011) Katarzyna Gorska et al.   Chemical Science

Amplified Detection of DNA through an Autocatalytic and Catabolic DNAzyme-Mediated Process

(2010) Fuan Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Lipopolythiourea/DNA interaction: A biophysical study

(2010) Teresa Kral et al.   BIOPHYSICAL CHEMISTRY

Rapid and sensitive detection of DNA polymerase fidelity by singly labeled smart fluorescent probes

(2010) Chen Song et al.   BIOSENSORS & BIOELECTRONICS

DNA–polyfluorophore excimers as sensitive reporters for esterases and lipases

(2010) Nan Dai et al.   CHEMICAL COMMUNICATIONS

Water-soluble fluorescent conjugated polymers and their interactions with biomacromolecules for sensitive biosensors

(2010) Xuli Feng et al.   CHEMICAL SOCIETY REVIEWS

DNA end-processing enzyme polynucleotide kinase as a potential target in the treatment of cancer

(2010) Sarah L Allinson   Future Oncology

Direct Measurement of the Rates and Barriers on Forward and Reverse Diffusions of Intramolecular Collision in Overhang Oligonucleotides

(2010) Peng Qu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Measuring, in Solution, Multiple-Fluorophore Labeling by Combining Fluorescence Correlation Spectroscopy and Photobleaching

(2010) Antoine Delon et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Relaxation Kinetics by Fluorescence Correlation Spectroscopy: Determination of Kinetic Parameters in the Presence of Fluorescent Impurities

(2010) Marcia Levitus   Journal of Physical Chemistry Letters

Glowing Locked Nucleic Acids: Brightly Fluorescent Probes for Detection of Nucleic Acids in Cells

(2010) Michael E. Østergaard et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Sensitive and Selective Amplified Fluorescence DNA Detection Based on Exonuclease III-Aided Target Recycling

(2010) Xiaolei Zuo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Monitoring helicase-catalyzed DNA unwinding by fluorescence anisotropy and fluorescence cross-correlation spectroscopy

(2010) Xu Guang Xi et al.   METHODS

A DNA−Silver Nanocluster Probe That Fluoresces upon Hybridization

(2010) Hsin-Chih Yeh et al.   NANO LETTERS

Aptamers Generated from Cell-SELEX for Molecular Medicine: A Chemical Biology Approach

(2009) Xiaohong Fang et al.   ACCOUNTS OF CHEMICAL RESEARCH

Cationic Conjugated Polymers for Optical Detection of DNA Methylation, Lesions, and Single Nucleotide Polymorphisms

(2009) Xinrui Duan et al.   ACCOUNTS OF CHEMICAL RESEARCH

Nano-flares for mRNA Regulation and Detection

(2009) Andrew E. Prigodich et al.   ACS Nano

A DNA nanoswitch incorporating the fluorescent base analogue 2-aminopurine detects single nucleotide mismatches in unlabelled targets

(2009) Colin J. Campbell et al.   ANALYST

Single-walled carbon nanotube as an effective quencher

(2009) Zhi Zhu et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Real-Time Monitoring of the Activity and Kinetics of T4 Polynucleotide Kinase by a Singly Labeled DNA-Hairpin Smart Probe Coupled with λ Exonuclease Cleavage

(2009) Chen Song et al.   ANALYTICAL CHEMISTRY

Single Quantum-Dot-Based Aptameric Nanosensor for Cocaine

(2009) Chun-yang Zhang et al.   ANALYTICAL CHEMISTRY

Noncompetitive Fluorescence Polarization Aptamer-based Assay for Small Molecule Detection

(2009) Josephine Ruta et al.   ANALYTICAL CHEMISTRY

Enrichment of Cancer Cells Using Aptamers Immobilized on a Microfluidic Channel

(2009) Joseph A. Phillips et al.   ANALYTICAL CHEMISTRY

Using Aptamer-Conjugated Fluorescence Resonance Energy Transfer Nanoparticles for Multiplexed Cancer Cell Monitoring

(2009) Xiaolan Chen et al.   ANALYTICAL CHEMISTRY

Specific Nucleic Acid Detection Using Photophysical Properties of Quantum Dot Probes

(2009) Sun Hee Lim et al.   ANALYTICAL CHEMISTRY

Singly labeled smart probes for real-time monitoring of the kinetics of dNTP misincorporation and single nucleotide extension in DNA intra-molecular polymerization

(2009) Chen Song et al.   BIOSENSORS & BIOELECTRONICS

Functional Nucleic Acid Sensors

(2009) Juewen Liu et al.   CHEMICAL REVIEWS

Monitoring intracellular degradation of exogenous DNA using diffusion properties

(2009) Akira Sasaki et al.   JOURNAL OF CONTROLLED RELEASE

Imaging of mRNA in Live Cells Using Nucleic Acid-Templated Reduction of Azidorhodamine Probes

(2009) Zbigniew Pianowski et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Efficient Nucleic Acid Detection by Templated Reductive Quencher Release

(2009) Raphael M. Franzini et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Polyfluorophores on a DNA Backbone: A Multicolor Set of Labels Excited at One Wavelength

(2009) Yin Nah Teo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Terminal Protection of Small-Molecule-Linked DNA for Sensitive Electrochemical Detection of Protein Binding via Selective Carbon Nanotube Assembly

(2009) Zhan Wu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Gene Regulation with Polyvalent siRNA−Nanoparticle Conjugates

(2009) David A. Giljohann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Developing Mixed Films of Immobilized Oligonucleotides and Quantum Dots for the Multiplexed Detection of Nucleic Acid Hybridization Using a Combination of Fluorescence Resonance Energy Transfer and Direct Excitation of Fluorescence

(2009) W. Russ Algar et al.   LANGMUIR

Feasibility of single nucleotide polymorphism genotyping with a single-probe by time-resolved Förster resonance energy transfer

(2009) Alessandra Andreoni et al.   MOLECULAR AND CELLULAR PROBES

Detection of single nucleotide polymorphisms using a DNA Holliday junction nanoswitch—a high-throughput fluorescence lifetime assay

(2009) Colin D. McGuinness et al.   Molecular BioSystems

Sub-cellular trafficking and functionality of 2′- O -methyl and 2′- O -methyl-phosphorothioate molecular beacons

(2009) Antony K. Chen et al.   NUCLEIC ACIDS RESEARCH

Time-resolved FRET method for typing polymorphic alleles of the human leukocyte antigen system by using a single DNA probe

(2009) Alessandra Andreoni et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Aptamer-Based Multicolor Fluorescent Gold Nanoprobes for Multiplex Detection in Homogeneous Solution

(2009) Juan Zhang et al.   Small

FIT probes: Peptide nucleic acid probes with a fluorescent base surrogate enable real-time DNA quantification and single nucleotide polymorphism discovery

(2008) Elke Socher et al.   ANALYTICAL BIOCHEMISTRY

Fluorescence Polarization Based Displacement Assay for the Determination of Small Molecules with Aptamers

(2008) Jorge A. Cruz-Aguado et al.   ANALYTICAL CHEMISTRY

Noncovalent Assembly of Carbon Nanotubes and Single-Stranded DNA: An Effective Sensing Platform for Probing Biomolecular Interactions

(2008) Ronghua Yang et al.   ANALYTICAL CHEMISTRY

Molecular Engineering of DNA: Molecular Beacons

(2008) Kemin Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Base-by-Base Dynamics in DNA Hybridization Probed by Fluorescence Correlation Spectroscopy

(2008) Xudong Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Oligonucleotide-Stabilized Ag Nanocluster Fluorophores

(2008) Chris I. Richards et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Versatile Synthesis Strategy for Carboxylic Acid−functionalized Upconverting Nanophosphors as Biological Labels

(2008) Zhigang Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Carbon Nanotube-Quenched Fluorescent Oligonucleotides: Probes that Fluoresce upon Hybridization

(2008) Ronghua Yang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Displacement of protein-bound aptamers with small molecules screened by fluorescence polarization

(2008) Markus Hafner et al.   Nature Protocols

Enzymatic signal amplification of molecular beacons for sensitive DNA detection

(2008) Jianwei Jeffery Li et al.   NUCLEIC ACIDS RESEARCH

New cyanine dyes as base surrogates in PNA: Forced intercalation probes (FIT-probes) for homogeneous SNP detection

(2007) Lucas Bethge et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Pyrene Excimer Signaling Molecular Beacons for Probing Nucleic Acids

(2007) Patrick Conlon et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY