Fluorescent DNA-based enzyme sensors

Analysis of Genes, Transcripts, and Proteins via DNA Ligation

(2010) Tim Conze et al.   Annual Review of Analytical Chemistry

Real-time monitoring of RNA helicase activity using fluorescence resonance energy transfer in vitro

(2010) Hidenori Tani et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DNA–polyfluorophore excimers as sensitive reporters for esterases and lipases

(2010) Nan Dai et al.   CHEMICAL COMMUNICATIONS

Fluorescent Analogs of Biomolecular Building Blocks: Design, Properties, and Applications

(2010) Renatus W. Sinkeldam et al.   CHEMICAL REVIEWS

Multiple native states reveal persistent ruggedness of an RNA folding landscape

(2010) Sergey V. Solomatin et al.   NATURE

Toward a designed genetic system with biochemical function: polymerase synthesis of single and multiple size-expanded DNA base pairs

(2010) Haige Lu et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Molecular aptamer beacon for myotonic dystrophy kinase-related Cdc42-binding kinase α

(2010) Junie Tok et al.   TALANTA

Real-Time Monitoring of the Activity and Kinetics of T4 Polynucleotide Kinase by a Singly Labeled DNA-Hairpin Smart Probe Coupled with λ Exonuclease Cleavage

(2009) Chen Song et al.   ANALYTICAL CHEMISTRY

High-throughput screening assay of hepatitis C virus helicase inhibitors using fluorescence-quenching phenomenon

(2009) Hidenori Tani et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fluorophore–quencher pair for monitoring protein motion

(2009) Deborah C. Tahmassebi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Functional Nucleic Acid Sensors

(2009) Juewen Liu et al.   CHEMICAL REVIEWS

Polyfluorophore Labels on DNA: Dramatic Sequence Dependence of Quenching

(2009) Yin Nah Teo et al.   CHEMISTRY-A EUROPEAN JOURNAL

Polyfluorophores on a DNA Backbone: A Multicolor Set of Labels Excited at One Wavelength

(2009) Yin Nah Teo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Real-time studies of conformational dynamics of the repair enzyme E. coli formamidopyrimidine-DNA glycosylase and its DNA complexes during catalytic cycle

(2009) Vladimir V. Koval et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Coordinating DNA replication by means of priming loop and differential synthesis rate

(2009) Manjula Pandey et al.   NATURE

Highly efficient incorporation of the fluorescent nucleotide analogs tC and tCO by Klenow fragment

(2009) P. Sandin et al.   NUCLEIC ACIDS RESEARCH

Single molecule measurement of the "speed limit" of DNA polymerase

(2009) J. J. Schwartz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Engineering of DNA: Molecular Beacons

(2008) Kemin Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Molecular beacons: An optimal multifunctional biological probe

(2008) Yongsheng Li et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Monitoring helicase activity with molecular beacons

(2008) Craig A. Belon et al.   BIOTECHNIQUES

Twenty-five years of quantitative PCR for gene expression analysis

(2008) Heather D. VanGuilder et al.   BIOTECHNIQUES

Light-Switching Excimer Beacon Assays For Ribonuclease H Kinetic Study

(2008) Yan Chen et al.   CHEMBIOCHEM

Functions of base flipping in E. coli nucleotide excision repair

(2008) E MALTA et al.   DNA REPAIR

Fluorescence Mapping of the Open Complex of Yeast Mitochondrial RNA Polymerase

(2008) Guo-Qing Tang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

(2008) Lisa A. Schroeder et al.   JOURNAL OF MOLECULAR BIOLOGY

Fluorescence of Size-Expanded DNA Bases:  Reporting on DNA Sequence and Structure with an Unnatural Genetic Set

(2008) Andrew T. Krueger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Aptamer-Based Optical Probes with Separated Molecular Recognition and Signal Transduction Modules

(2008) Na Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Aptamer Switch Probe Based on Intramolecular Displacement

(2008) Zhiwen Tang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Dynamic binding orientations direct activity of HIV reverse transcriptase

(2008) Elio A. Abbondanzieri et al.   NATURE

Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics

(2008) Hari Shroff et al.   NATURE METHODS

Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP

(2008) Julie S Biteen et al.   NATURE METHODS

Mechanisms and strategies for effective delivery of antisense and siRNA oligonucleotides

(2008) R. Juliano et al.   NUCLEIC ACIDS RESEARCH

Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase

(2008) B. Theissen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-templated single-base mutation detection based on T4 DNA ligase and reverse molecular beacon

(2008) H TANG et al.   TALANTA