Landscape-Scale Factors Affecting the Prevalence of Escherichia coli in Surface Soil Include Land Cover Type, Edge Interactions, and Soil pH

Environmental Growth of Enterococci and Escherichia coli in Feedlot Catch Basins and a Constructed Wetland in the Absence of Fecal Input

(2017) Lisa Tymensen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Environmental Escherichia coli : ecology and public health implications-a review

(2017) J. Jang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Distribution of Diverse Escherichia coli between Cattle and Pasture

(2017) Gitanjali NandaKafle et al.   MICROBES AND ENVIRONMENTS

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore

(2017) Nicholas M. Fountain-Jones et al.   MOLECULAR ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Genetic Attributes of E. coli Isolates from Chlorinated Drinking Water

(2017) Michaela D. J. Blyton et al.   PLoS One

The General Stress Response Is Conserved in Long-Term Soil-Persistent Strains of Escherichia coli

(2016) Yinka Somorin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatiotemporal Analysis of Microbiological Contamination in New York State Produce Fields following Extensive Flooding from Hurricane Irene, August 2011

(2016) PETER W. BERGHOLZ et al.   JOURNAL OF FOOD PROTECTION

The Interplay Between Predation, Competition, and Nutrient Levels Influences the Survival of Escherichia coli in Aquatic Environments

(2016) P. Wanjugi et al.   MICROBIAL ECOLOGY

Depth-Dependent Survival of Escherichia coli and Enterococci in Soil after Manure Application and Simulated Rainfall

(2015) M. D. Stocker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Validation of a Previously Developed Geospatial Model That Predicts the Prevalence of Listeria monocytogenes in New York State Produce Fields

(2015) Daniel Weller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multifactorial Effects of Ambient Temperature, Precipitation, Farm Management, and Environmental Factors Determine the Level of Generic Escherichia coli Contamination on Preharvested Spinach

(2015) Sangshin Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Comparative accessory gene fingerprinting of surface waterEscherichia colireveals genetically diverse naturalized population

(2015) L.D. Tymensen et al.   JOURNAL OF APPLIED MICROBIOLOGY

The unexhausted potential of E. coli

(2015) Zachary D Blount   eLife

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Large-scale genomic sequencing of extraintestinal pathogenicEscherichia colistrains

(2014) Stephen J. Salipante et al.   GENOME RESEARCH

The rpoS Gene Is Predominantly Inactivated during Laboratory Storage and Undergoes Source-Sink Evolution in Escherichia coli Species

(2014) A. Bleibtreu et al.   JOURNAL OF BACTERIOLOGY

Geographical and Meteorological Factors Associated with Isolation of Listeria Species in New York State Produce Production and Natural Environments

(2014) TRAVIS K. CHAPIN et al.   JOURNAL OF FOOD PROTECTION

Recombination Blurs Phylogenetic Groups Routine Assignment in Escherichia coli: Setting the Record Straight

(2014) María-Carmen Turrientes et al.   PLoS One

Evolutionary rescue in a changing world

(2014) Stephanie M. Carlson et al.   TRENDS IN ECOLOGY & EVOLUTION

Generic Escherichia coli Contamination of Spinach at the Preharvest Stage: Effects of Farm Management and Environmental Factors

(2013) S. Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evidence for Coexistence of Distinct Escherichia coli Populations in Various Aquatic Environments and Their Survival in Estuary Water

(2013) T. Berthe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary rescue in populations ofPseudomonas fluorescensacross an antibiotic gradient

(2013) Johan Ramsayer et al.   Evolutionary Applications

Roadside ditches as conduits of fecal indicator organisms and sediment: Implications for water quality management

(2013) Kimberly Falbo et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Phylogenetic distribution of traits associated with plant colonization inEscherichia coli

(2012) Guillaume Méric et al.   ENVIRONMENTAL MICROBIOLOGY

Insights into the low-temperature adaptation and nutritional flexibility of a soil-persistentEscherichia coli

(2012) Fiona P. Brennan et al.   FEMS MICROBIOLOGY ECOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Persistence ofEscherichia coliintroduced into streambed sediments with goose, deer and bovine animal waste

(2012) L.A. Kiefer et al.   LETTERS IN APPLIED MICROBIOLOGY

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Escherichia coli survival in waters: Temperature dependence

(2012) R.A. Blaustein et al.   WATER RESEARCH

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Patterns Are Imposed on the Population Structure ofEscherichia coliafter Fecal Deposition

(2010) Peter W. Bergholz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Environmentally Persistent Escherichia coli Isolates Leached from an Irish Soil

(2010) F. P. Brennan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Estimating the stability of Escherichia coli O157:H7 survival in manure-amended soils with different management histories

(2008) Alexander V. Semenov et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term survival of Shiga toxin-producing Escherichia coli in cattle effluents and environment: An updated review

(2008) B. Fremaux et al.   VETERINARY MICROBIOLOGY