Environmental Escherichia coli : ecology and public health implications-a review

Tempo and mode of genome evolution in a 50,000-generation experiment

(2016) Olivier Tenaillon et al.   NATURE

Correlations between pathogen concentration and fecal indicator marker genes in beach environments

(2016) Qian Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative accessory gene fingerprinting of surface waterEscherichia colireveals genetically diverse naturalized population

(2015) L.D. Tymensen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Extra-intestinal pathogenic Escherichia coli (ExPEC): Disease, carriage and clones

(2015) Adam P. Dale et al.   JOURNAL OF INFECTION

Prevalence and Characterization of Shiga Toxin-Producing and Enteropathogenic Escherichia coli in Shellfish-Harvesting Areas and Their Watersheds

(2015) Charlotte Balière et al.   Frontiers in Microbiology

A short review of fecal indicator bacteria in tropical aquatic ecosystems: knowledge gaps and future directions

(2015) Emma Rochelle-Newall et al.   Frontiers in Microbiology

Application of a Microfluidic Quantitative Polymerase Chain Reaction Technique To Monitor Bacterial Pathogens in Beach Water and Complex Environmental Matrices

(2015) Muruleedhara N. Byappanahalli et al.   Environmental Science & Technology Letters

Pathogenic Potential, Genetic Diversity, and Population Structure of Escherichia coli Strains Isolated from a Forest-Dominated Watershed (Comox Lake) in British Columbia, Canada

(2014) Abhirosh Chandran et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biotic Interactions and Sunlight Affect Persistence of Fecal Indicator Bacteria and Microbial Source Tracking Genetic Markers in the Upper Mississippi River

(2014) Asja Korajkic et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evidence for free-living Bacteroides in Cladophora along the shores of the Great Lakes

(2014) RL Whitman et al.   AQUATIC MICROBIAL ECOLOGY

Fecal Source Tracking in Water by Next-Generation Sequencing Technologies Using Host-Specific Escherichia coli Genetic Markers

(2014) Ryota Gomi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Water Quality Monitoring and Risk Assessment by Simultaneous Multipathogen Quantification

(2014) Satoshi Ishii et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification

(2014) Marius Vital et al.   ISME Journal

Enteric Pathogen-Plant Interactions: Molecular Connections Leading to Colonization and Growth and Implications for Food Safety

(2014) Betsy M. Martínez-Vaz et al.   MICROBES AND ENVIRONMENTS

Evidence for Coexistence of Distinct Escherichia coli Populations in Various Aquatic Environments and Their Survival in Estuary Water

(2013) T. Berthe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent Advances in Understanding Enteric Pathogenic Escherichia coli

(2013) M. A. Croxen et al.   CLINICAL MICROBIOLOGY REVIEWS

Abrupt Emergence of a Single Dominant Multidrug-Resistant Strain of Escherichia coli

(2013) James R. Johnson et al.   JOURNAL OF INFECTIOUS DISEASES

Are microbial indicators and pathogens correlated? A statistical analysis of 40 years of research

(2013) J. Wu et al.   JOURNAL OF WATER AND HEALTH

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

(2013) Elizabeth MH Wellington et al.   LANCET INFECTIOUS DISEASES

Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli

(2013) T. H. Hazen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enterococcus and Escherichia coli fecal source apportionment with microbial source tracking genetic markers – Is it feasible?

(2013) Dan Wang et al.   WATER RESEARCH

The Salmonella Transcriptome in Lettuce and Cilantro Soft Rot Reveals a Niche Overlap with the Animal Host Intestine

(2012) Danielle M. Goudeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of horizontal gene transfer in the dissemination of extended-spectrum beta-lactamase–producing Escherichia coli and Klebsiella pneumoniae isolates in an endemic setting

(2012) Yohei Doi et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Phylogenetic distribution of traits associated with plant colonization inEscherichia coli

(2012) Guillaume Méric et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogenic Escherichia coli Strains Producing Extended-Spectrum β-Lactamases in the Yeongsan River Basin of South Korea

(2012) Jeonghwan Jang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Insights into the low-temperature adaptation and nutritional flexibility of a soil-persistentEscherichia coli

(2012) Fiona P. Brennan et al.   FEMS MICROBIOLOGY ECOLOGY

Review of Shiga-toxin-producing Escherichia coli (STEC) and their significance in dairy production

(2012) Choreh Farrokh et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Complete DNA Sequence Analysis of Enterohemorrhagic Escherichia coli Plasmid pO157_2 in  -Glucuronidase-Positive E. coli O157:H7 Reveals a Novel Evolutionary Path

(2012) L. V. Rump et al.   JOURNAL OF BACTERIOLOGY

Phylogenetic Distribution of CTX-M- and Non-Extended-Spectrum- -Lactamase-Producing Escherichia coli Isolates: Group B2 Isolates, Except Clone ST131, Rarely Produce CTX-M Enzymes

(2012) S. Brisse et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The population structure of Escherichia coli isolated from subtropical and temperate soils

(2012) Muruleedhara N. Byappanahalli et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

Biofilm Formation by and Thermal Niche and Virulence Characteristics of Escherichia spp.

(2011) Danielle J. Ingle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil microbial community response to drying and rewetting stress: does historical precipitation regime matter?

(2011) Sarah E. Evans et al.   BIOGEOCHEMISTRY

Prevalence of season-specific Escherichia coli strains in the Yeongsan River Basin of South Korea

(2011) Jeonghwan Jang et al.   ENVIRONMENTAL MICROBIOLOGY

Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study

(2011) Timothy R Walsh et al.   LANCET INFECTIOUS DISEASES

Epidemic Profile of Shiga-Toxin–ProducingEscherichia coliO104:H4 Outbreak in Germany

(2011) Christina Frank et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Survival of Escherichia coli in the environment: fundamental and public health aspects

(2010) Jan Dirk van Elsas et al.   ISME Journal

Isolation of fluoroquinolone-resistant O25b:H4-ST131 Escherichia coli with CTX-M-14 extended-spectrum  -lactamase from UK river water

(2010) H. Dhanji et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Factors Controlling Long-Term Survival and Growth of Naturalized Escherichia coli Populations in Temperate Field Soils

(2010) Satoshi Ishii et al.   MICROBES AND ENVIRONMENTS

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Large scale analysis of virulence genes in Escherichia coli strains isolated from Avalon Bay, CA

(2010) Matthew J. Hamilton et al.   WATER RESEARCH

Cryptic Lineages of the Genus Escherichia

(2009) S. T. Walk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution

(2009) Satoshi Ishii et al.   ENVIRONMENTAL MICROBIOLOGY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Ecology ofE. coliO157:H7 andSalmonella entericain the Primary Vegetable Production Chain

(2008) Eelco Franz et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Antibiotics and antibiotic resistance in water environments

(2008) Fernando Baquero et al.   CURRENT OPINION IN BIOTECHNOLOGY

Escherichia coli in the Environment: Implications for Water Quality and Human Health

(2008) Satoshi Ishii et al.   MICROBES AND ENVIRONMENTS