RNA Sequencing Reveals Differences between the Global Transcriptomes of Salmonella enterica Serovar Enteritidis Strains with High and Low Pathogenicities

On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004

(2013) Marc W. Allard et al.   PLoS One

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Salmonella Enteritidis Strains from Poultry Exhibit Differential Responses to Acid Stress, Oxidative Stress, and Survival in the Egg Albumen

(2012) Devendra H. Shah et al.   Foodborne Pathogens and Disease

Transposon Mutagenesis of Salmonella enterica Serovar Enteritidis Identifies Genes That Contribute to Invasiveness in Human and Chicken Cells and Survival in Egg Albumen

(2012) Devendra H. Shah et al.   INFECTION AND IMMUNITY

A glycine betaine importer limitsSalmonellastress resistance and tissue colonization by reducing trehalose production

(2012) M. Carolina Pilonieta et al.   MOLECULAR MICROBIOLOGY

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

(2012) Chinyere K Okoro et al.   NATURE GENETICS

Naturally Occurring Motility-Defective Mutants of Salmonella enterica Serovar Enteritidis Isolated Preferentially from Nonhuman Rather than Human Sources

(2011) Lucía Yim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In vitro and in vivo pathogenicity of Salmonella enteritidis clinical strains isolated from North America

(2011) Devendra H. Shah et al.   ARCHIVES OF MICROBIOLOGY

Deletion of yncD gene in Salmonella enterica ssp. enterica serovar Typhi leads to attenuation in mouse model

(2011) Kun Xiong et al.   FEMS MICROBIOLOGY LETTERS

Cell invasion of poultry-associated Salmonella enterica serovar Enteritidis isolates is associated with pathogenicity, motility and proteins secreted by the type III secretion system

(2011) D. H. Shah et al.   MICROBIOLOGY-SGM

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

(2011) Hana Yi et al.   NUCLEIC ACIDS RESEARCH

Adaptation to the chicken intestine in Salmonella Enteritidis PT4 studied by transcriptional analysis

(2011) A.A. Dhawi et al.   VETERINARY MICROBIOLOGY

Differential Phenotypic Diversity among Epidemic-Spanning Salmonella enterica Serovar Enteritidis Isolates from Humans or Animals

(2010) L. Yim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic Responses of Salmonella enterica Serovars Enteritidis and Typhimurium to Chlorine-Based Oxidative Stress

(2010) S. Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Helicobacter pylori γ-Glutamyl Transpeptidase Is a Pathogenic Factor in the Development of Peptic Ulcer Disease

(2010) Min Gong et al.   GASTROENTEROLOGY

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Lipoproteins of Bacterial Pathogens

(2010) A. Kovacs-Simon et al.   INFECTION AND IMMUNITY

A mutation in tdcA attenuates the virulence of Salmonella enterica serovar Typhimurium

(2010) Sangyong Lim et al.   MOLECULES AND CELLS

The Hyb Hydrogenase Permits Hydrogen-Dependent Respiratory Growth of Salmonella enterica Serovar Typhimurium

(2010) R. Lamichhane-Khadka et al.   mBio

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates

(2009) Laura Betancor et al.   BMC MICROBIOLOGY

Virulence potential of five major pathogenicity islands (SPI-1 to SPI-5) of Salmonella enterica serovar Enteritidis for chickens

(2009) Ivan Rychlik et al.   BMC MICROBIOLOGY

Invasive Non‐TyphiSalmonellaDisease in Africa

(2009) Susan C. Morpeth et al.   CLINICAL INFECTIOUS DISEASES

Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport

(2009) Z. Pan et al.   MICROBIOLOGY-SGM

A tdcA mutation reduces the invasive ability of Salmonella enterica serovar typhimurium

(2009) Minjeong Kim et al.   MOLECULES AND CELLS

Invasive salmonellosis in Malawi

(2009) Melita A. Gordon et al.   Journal of Infection in Developing Countries

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

(2009) Timothy T. Perkins et al.   PLoS Genetics

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

(2008) N. R. Thomson et al.   GENOME RESEARCH

Identification of a Bile-Induced Exopolysaccharide Required for Salmonella Biofilm Formation on Gallstone Surfaces

(2008) R. W. Crawford et al.   INFECTION AND IMMUNITY

Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins

(2008) S. E. Maddocks et al.   MICROBIOLOGY-SGM

TheSalmonellaEnteritidis Lipopolysaccharide Biosynthesis GenerfbHis Required for Survival in Egg Albumen

(2008) I. Gantois et al.   Zoonoses and Public Health

Experimental and computational approaches to quantitative proteomics: Status quo and outlook

(2007) Alexandre Panchaud et al.   Journal of Proteomics