Mobile Elements in a Single-Filament Orange Guaymas Basin Beggiatoa (“Candidatus Maribeggiatoa”) sp. Draft Genome: Evidence for Genetic Exchange with Cyanobacteria

Why Orange Guaymas Basin Beggiatoa spp. Are Orange: Single-Filament-Genome-Enabled Identification of an Abundant Octaheme Cytochrome with Hydroxylamine Oxidase, Hydrazine Oxidase, and Nitrite Reductase Activities

(2012) Barbara J. MacGregor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial heterogeneity and underlying geochemistry of phylogenetically diverse orange and white Beggiatoa mats in Guaymas Basin hydrothermal sediments

(2012) Luke J. McKay et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

(2012) V. Salman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Reconstruction of structural evolution in the trnL intron P6b loop of symbiotic Nostoc (Cyanobacteria)

(2011) Sanna Olsson et al.   CURRENT GENETICS

Balancing at survival's edge: the structure and adaptive benefits of prokaryotic toxin–antitoxin partners

(2011) Tim R Blower et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Vacuolated Beggiatoa-like filaments from different hypersaline environments form a novel genus

(2011) Susanne Hinck et al.   ENVIRONMENTAL MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria

(2011) Verena Salman et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Presence of Coxiella burnetii DNA in the Environment of the United States, 2006 to 2008

(2010) G. J. Kersh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inteins, valuable genetic elements in molecular biology and biotechnology

(2010) Skander Elleuche et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Toxin–antitoxin systems: why so many, what for?

(2010) Laurence Van Melderen   CURRENT OPINION IN MICROBIOLOGY

Coxiella burnetii Infection of a Steller Sea Lion (Eumetopias jubatus) Found in Washington State

(2010) G. J. Kersh et al.   JOURNAL OF CLINICAL MICROBIOLOGY

TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea

(2010) Yucheng Shao et al.   NUCLEIC ACIDS RESEARCH

Genome comparison and context analysis reveals putative mobile forms of restriction–modification systems and related rearrangements

(2010) Yoshikazu Furuta et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems

(2010) Mark A. Arbing et al.   STRUCTURE

Group II Introns: Mobile Ribozymes that Invade DNA

(2010) A. M. Lambowitz et al.   Cold Spring Harbor Perspectives in Biology

Intracellular Life of Coxiella burnetii in Macrophages

(2009) Eric Ghigo et al.   Annals of the New York Academy of Sciences

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes

(2009) Henri Grosjean et al.   FEBS LETTERS

Spatial and temporal variability in a stratified hypersaline microbial mat community

(2009) Jesse G. Dillon et al.   FEMS MICROBIOLOGY ECOLOGY

The Decay of the Chromosomally Encoded ccdO157 Toxin-Antitoxin System in the Escherichia coli Species

(2009) N. Mine et al.   GENETICS

Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs

(2009) E. Chernousova et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular Evolution of Multisubunit RNA Polymerases: Sequence Analysis

(2009) William J. Lane et al.   JOURNAL OF MOLECULAR BIOLOGY

A Broadscale Phylogenetic Analysis of Group II Intron RNAs and Intron-Encoded Reverse Transcriptases

(2009) D. M. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Excision of the nifD element in the heterocystous cyanobacteria

(2008) B. J. Henson et al.   ARCHIVES OF MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Transfer RNA genes in pieces

(2008) Lennart Randau et al.   EMBO REPORTS

Video-supported Analysis of Beggiatoa Filament Growth, Breakage, and Movement

(2008) Anja Kamp et al.   MICROBIAL ECOLOGY

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH