Reverse vaccinology in the 21st century: improvements over the original design
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Title
Reverse vaccinology in the 21st century: improvements over the original design
Authors
Keywords
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Journal
Annals of the New York Academy of Sciences
Volume 1285, Issue 1, Pages 115-132
Publisher
Wiley
Online
2013-03-26
DOI
10.1111/nyas.12046
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- (2012) Y. Kim et al. NUCLEIC ACIDS RESEARCH
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- (2011) Alessandro Muzzi et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
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- (2011) Chris S. Smillie et al. NATURE
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- (2011) Peng Qiu et al. NATURE BIOTECHNOLOGY
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- (2011) Tomer Kalisky et al. NATURE METHODS
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- (2010) Marirosa Mora et al. JOURNAL OF MOLECULAR MEDICINE-JMM
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