Review
Gastroenterology & Hepatology
Hwi Young Kim
Summary: The clinical spectrum of NAFLD ranges from simple steatosis to NASH, with liver biopsy being the standard for diagnosis. Metabolomics has emerged as a promising diagnostic method to uncover metabolic alterations relevant to NASH progression, with recent research efforts focusing on lipidomics, amino acids, and bile acid metabolomics to discover potential biomarkers.
CLINICAL AND MOLECULAR HEPATOLOGY
(2021)
Article
Pharmacology & Pharmacy
Dawei Deng, Chen Pan, Zeming Wu, Yujiao Sun, Chang Liu, Hong Xiang, Peiyuan Yin, Dong Shang
Summary: Osteoporosis is increasingly common among the global elderly population, and serum metabolite markers are crucial for its treatment and prevention. Metabolomics and lipidomics analysis revealed that lipids metabolism, including glycerol phospholipids, sphingolipids, fatty acids, and bile acids, is deregulated in osteoporosis. Bile acids, particularly hyocholic acids, were found to play essential roles and may serve as potential markers for diagnosis and treatment.
FRONTIERS IN PHARMACOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Muzaffar Hussain Najar, Oyais Ahmad Chat, Parvaiz Ahmad Bhat, Mohammad Amin Mir, Ghulam Mohamamd Rather, Aijaz Ahmad Dar
Summary: In this study, the interactions between a series of bile salts and trypsin were investigated using multiple techniques. The results showed that bile salts with higher hydrophobicity had stronger interactions with trypsin, leading to significant unfolding of the protein. The findings contribute to a better understanding of hydrophobicity-driven unfolding of proteins aided by biological surfactants like bile salts.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2021)
Article
Environmental Sciences
Nina Lazarevic, Kayla S. Smurthwaite, Catherine D'Este, Robyn M. Lucas, Bruce Armstrong, Archie CA. Clements, Susan M. Trevenar, Imogen Gad, Rose Hosking, Hsei Di Law, Jochen Mueller, Jennifer Braunig, Sandra Nilsson, Jo Lane, Aparna Lal, Brett A. Lidbury, Rosemary J. Korda, Martyn D. Kirk
Summary: This study examined the associations between PFAS and cardiometabolic markers and conditions in communities with contaminated water. The findings suggest that PFAS exposure is associated with higher levels of total cholesterol, but not with liver function markers. There was only a clear association between PFAS and hypercholesterolemia in one of the communities, and no association with type II diabetes, liver disease, or cardiovascular disease.
ENVIRONMENTAL RESEARCH
(2023)
Review
Medicine, General & Internal
Samy A. Azer, Rana Hasanato
Summary: The study aimed to determine the effectiveness of bile acids as markers of liver dysfunction, however, results showed inconsistencies and a lack of solid evidence to support the use of bile acids as biomarkers of liver injury.
Article
Instruments & Instrumentation
Mette Klitgaard, Maja Norgaard Kristensen, Ramakrishnan Venkatasubramanian, Priscila Guerra, Jette Jacobsen, Ragna Berthelsen, Thomas Rades, Anette Mullertz
Summary: This study aimed to improve the preclinical evaluation of new oral drug formulations by investigating the DSS-induced colitis model. Various parameters were evaluated, and the disease activity index, colon length, and histological evaluation of the colon were identified as effective indicators of colitis in rats. The study also found that the DSS-induced colitis affected luminal pH, lipase activity, and concentrations of bile salts, polar lipids, and neutral lipids.
DRUG DELIVERY AND TRANSLATIONAL RESEARCH
(2023)
Article
Biochemistry & Molecular Biology
Xiaoying Liu, Mahmoud Khalafalla, Chuhan Chung, Yevgeniy Gindin, Susan Hubchak, Brian LeCuyer, Alyssa Kriegermeier, Danny Zhang, Wei Qiu, Xianzhong Ding, Deyu Fang, Richard Green
Summary: The hepatic XBP1 pathway is activated in older Fxr-/- mice and has a protective role.
JOURNAL OF LIPID RESEARCH
(2022)
Article
Biochemistry & Molecular Biology
Xinggu Lin, Shiou Yih Lee, Jianzhong Ni, Xiaomin Zhang, Xing Hu, Peishan Zou, Wei Wang, Guofeng Liu
Summary: This study sequenced and assembled the chloroplast genomes of Bougainvillea spectabilis 'Splendens' and compared it with other Bougainvillea species. The results provide valuable genetic resources for Bougainvillea breeding and offer molecular markers for species identification.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Parasitology
Abigail Hui En Chan, Kittipong Chaisiri, Sompob Saralamba, Serge Morand, Urusa Thaenkham
Summary: This study evaluated the suitability of genetic markers for molecular systematics and species identification in helminths, finding nuclear ribosomal internal transcribed spacers, nuclear rRNA, mitochondrial rRNA, and mitochondrial protein-coding genes to be the best genetic markers for these purposes. Estimation of cut-off genetic distances using the 'K-means' clustering algorithm provided valuable information for researchers conducting molecular studies on helminths.
PARASITES & VECTORS
(2021)
Article
Biochemistry & Molecular Biology
Lianne R. de Haan, Joanne Verheij, Rowan F. van Golen, Verena Horneffer-van der Sluis, Matthew R. Lewis, Ulrich H. W. Beuers, Thomas M. van Gulik, Steven W. M. Olde Damink, Frank G. Schaap, Michal Heger, Pim B. Olthof
Summary: This study found that OCA does not promote liver regeneration in post-cholestatic rats and does not exacerbate biliary damage caused by cholestasis.
Article
Biochemistry & Molecular Biology
Samuel A. J. Trammell, Luke F. Gamon, Kamil Gotfryd, Katja Thoroe Michler, Bandar D. Alrehaili, Iben Rix, Filip K. Knop, Pontus Gourdon, Yoon-Kwang Lee, Michael J. Davies, Matthew P. Gillum, Trisha J. Grevengoed
Summary: The study demonstrates that NATs, bioactive lipids involved in glucose homeostasis and lipid metabolism, are synthesized in human and mouse livers. The hepatic NAT synthase activity depends on BAAT, which expands the known substrates of BAAT beyond classic bile acids. This finding enhances our understanding of lipid metabolism and the role of bioactive lipids.
JOURNAL OF LIPID RESEARCH
(2023)
Article
Biochemistry & Molecular Biology
Maria Luisa Ojeda, Fatima Nogales, Jose A. Carrasco Lopez, Maria del Carmen Gallego-Lopez, Olimpia Carreras, Ana Alcudia, Eloisa Pajuelo
Summary: The administration of selenium supplements in different forms affects the colonic microbiota and bile salts homeostasis in adolescent rats, leading to changes in adipose tissue development. Low levels of sodium selenite supplementation primarily affect liver function, while low SeNP levels mainly affect the microbiota. Moderate-SeNPs administration causes dysbiosis and an increase in pathogenic bacteria. These results indicate the mechanistic involvement of the microbiota-liver-bile salts axis in adipose tissue changes during adolescence.
Article
Chemistry, Analytical
Carter K. Asef, Markace A. Rainey, Brianna M. Garcia, Goncalo J. Gouveia, Amanda O. Shaver, Franklin E. Leach, Alison M. Morse, Arthur S. Edison, Lauren M. McIntyre, Facundo M. Fernandez
Summary: Ion mobility spectrometry (IM) provides valuable data for identifying unknown metabolites in non-targeted metabolomics. This study presents a workflow using de novo molecular formula annotation, MS/MS structure elucidation, and machine learning predictions to identify differential unknown metabolites in Caenorhabditis elegans mutant strains. However, the performance of this approach is limited by instrumentation and data analysis challenges, resulting in a relatively low success rate in filtering candidate structures.
ANALYTICAL CHEMISTRY
(2023)
Article
Plant Sciences
Yujing Miao, Haimei Chen, Wanqi Xu, Qiaoqiao Yang, Chang Liu, Linfang Huang
Summary: This study characterized the plastomes of four Cistanche species from China to clarify their phylogenetic relationships and develop molecular markers for species discrimination. The analysis revealed a conserved quadripartite structure in the plastomes and high rates of gene loss in Cistanche species. The developed DNA barcodes showed 100% success rate in species discrimination.
Article
Biochemistry & Molecular Biology
Celia Breaud, Laura Lallemand, Gary Mares, Fathi Mabrouki, Myriam Bertolotti, Charlotte Simmler, Stephane Greff, Morgane Mauduit, Gaetan Herbette, Eldar Garayev, Christophe Lavergne, Maya Cesari, Sok-Siya Bun-Llopet, Beatrice Baghdikian, Elnur Garayev
Summary: Aloe plants have been used in traditional medicine for centuries and are considered an important source of natural products. This study investigated the chemical composition of the leaves of five Aloe species using a Molecular Network approach. The study found that these species are rich in polyphenols and have antioxidant activity, suggesting that Aloe plants could be a valuable source of new chemical structures.
Article
Chemistry, Analytical
Britt S. R. Claes, Kasper K. Krestensen, Gargey Yagnik, Andrej Grgic, Christel Kuik, Mark J. Lim, Kenneth J. Rothschild, Michiel Vandenbosch, Ron M. A. Heeren
Summary: A novel technology called MALDIIHC was published, which combined MALDI-MSI and IHC to achieve targeted imaging of biomolecules in tissue. The utility of targeted MALDIIHC and its complementarity with untargeted on-tissue proteomics was explored using breast cancer tissue. MALDI-2 was also investigated and demonstrated to improve MALDI-IHC. The combination of multiplexed MALDI-IHC with image-guided proteomics showed great potential in studying diseases.
ANALYTICAL CHEMISTRY
(2023)
Article
Gastroenterology & Hepatology
Luc J. W. van der Laan, Thijs Bosker, Willie J. G. M. Peijnenburg
Summary: A new report from the World Health Organization assesses the risks of dietary exposure to nanoplastic and microplastic particles. Although detecting these particles in food and beverages remains challenging, human exposure is evident. So far, there is no convincing evidence of adverse health effects, but significant knowledge gaps remain.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY
(2023)
Article
Oncology
Lennart Huizing, Lin Chen, Anjali A. A. Roeth, Lara R. R. Heij, Bryn Flinders, Stefan A. W. Bouwense, Benjamin Balluff, Ulf P. P. Neumann, Ron M. A. Heeren, Steven W. M. Olde Damink, Rob J. J. Vreeken, Frank G. G. Schaap
Summary: Sulfatides were found in tumor tissue of patients with intrahepatic cholangiocarcinoma (iCCA), and the abundance and ratio of unsaturated to saturated sulfatides were associated with tumor recurrence in iCCA patients.
Article
Biochemical Research Methods
Kasper Krijnen, Joel D. Keelor, Sebastian Boehm, Shane R. Ellis, Claus Koester, Jens Hoehndorf, Ron M. A. Heeren, Ian G. M. Anthony
Summary: Mass spectrometry imaging (MSI) is a surface analysis technique used for biological research, and multimodal imaging combining multiple imaging modes can provide a more comprehensive view of samples. In this study, a prototype Bruker timsTOF fleX instrument was modified to include secondary ion mass spectrometry (SIMS) and secondary electron (SE) imaging capabilities while preserving matrix-assisted laser desorption/ionization (MALDI) capability. The modified instrument showed improved efficiency in multimodal imaging, allowing for easy registration of images and eliminating the need for sample transfer.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2023)
Article
Health Care Sciences & Services
Nicole Hildebrand, Allard G. Wijma, Bart C. Bongers, Sander S. Rensen, Marcel den Dulk, Joost M. Klaase, Steven W. M. Olde Damink
Summary: The study aims to assess the feasibility of a home-based exercise prehabilitation program in unfit patients scheduled for pancreatic surgery. The program includes high-intensity interval training and functional task exercises to improve patients' aerobic capacity and muscle function, leading to better treatment outcomes and quality of life. The results of this study may have important implications for implementing prehabilitation programs in complex abdominal surgeries such as pancreatic surgery.
JMIR RESEARCH PROTOCOLS
(2023)
Article
Oncology
Roos G. F. M. van der Ven, Daan N. Westra, Felice H. van Erning, Ignace de Hingh, Steven W. M. Olde Damink, Agnes Paulus, Wouter K. G. Leclercq, Marcel den Dulk, OncoZON Consortium
Summary: This study examines whether inequalities in the utilization of resection and/or ablation for synchronous colorectal liver metastases (SCLM) between expert and non-expert hospitals changed since the implementation of a multi-hospital network. The findings show that despite the establishment of the network, patients diagnosed in expert hospitals were more likely to receive specialized treatment than those diagnosed in non-expert hospitals, and this disparity increased over time.
Article
Critical Care Medicine
Michelle R. Baggerman, Ingeborg M. Dekker, Bjorn Winkens, Steven W. M. Olde Damink, Sandra N. Stapel, Peter J. M. Weijs, Marcel C. G. van de Poll
Summary: This study investigated the association between visceral obesity, BMI and 90-day mortality in critically ill patients. The results showed no significant association between visceral obesity and BMI with 90-day mortality, although obesity and visceral obesity tended to be associated with improved 90-day mortality.
JOURNAL OF CRITICAL CARE
(2023)
Article
Biochemical Research Methods
Britt S. R. Claes, Andrew P. Bowman, Berwyck L. J. Poad, Ron M. A. Heeren, Stephen J. Blanksby, Shane R. Ellis
Summary: The biological functions of lipids highly depend on their molecular structures, specifically even small changes in structure such as different positions of unsaturation serve as critical indicators for changes in metabolism. However, conventional mass spectrometry imaging faces challenges in differentiating lipid isomers with mixture and structural complexity. Recent advances in ozone-induced dissociation coupled with matrix-assisted laser desorption/ionization have shown potential in mapping individual double-bond isomers and visualizing lipid desaturation in adjacent tissue types. This study employs a high-speed gas-phase reaction between ionized lipids and ozone to interrogate anionic glycerophospholipids isomers in biological tissues, providing valuable information on unsaturation and acyl chain composition from a single mass spectrum.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2023)
Article
Surgery
Iakovos Amygdalos, Lea Hitpass, Felix Schmidt, Gerrit Josephs, Jan Bednarsch, Marie-Luise Berres, Tom Luedde, Steven W. M. Olde Damink, Tom Florian Ulmer, Ulf P. Neumann, Philipp Bruners, Sven Arke Lang
Summary: This study examines the efficacy of liver resection combined with local ablative therapy compared to liver resection only, in the treatment of patients with = 4 colorectal liver metastases (CRLM). The results show that combined resection-ablation is a viable option for patients with = 4 CRLM in terms of overall survival (OS) and recurrence-free survival (RFS).
LANGENBECKS ARCHIVES OF SURGERY
(2023)
Article
Chemistry, Multidisciplinary
Rianne E. E. van Outersterp, Jonathan Martens, Giel Berden, Arnaud Lubin, Filip Cuyckens, Jos Oomens
Summary: The identification of biotransformation products of drug compounds is crucial for drug development. Liquid chromatography-mass spectrometry (LC-MS) has become the preferred method for metabolite profiling due to its high sensitivity and selectivity. However, determining the full molecular structure of the detected metabolites, including the exact biotransformation site, remains challenging using MS alone.
Article
Surgery
Xinwei Chang, Remon Korenblik, Bram Olij, Robrecht R. M. M. Knapen, Christiaan van der Leij, Daniel Heise, Marcel den Dulk, Ulf P. Neumann, Frank G. Schaap, Ronald M. van Dam, Steven W. M. Olde Damink
Summary: The study aimed to investigate the impact of cholestasis on portal vein embolization-induced hypertrophy of the future liver remnant (FLR). In a pre-clinical setting, it was found that hepatocellular bile salt accumulation did not affect FLR hypertrophy induced by PVE.
LANGENBECKS ARCHIVES OF SURGERY
(2023)
Article
Chemistry, Analytical
Britt S. R. Claes, Kasper K. Krestensen, Gargey Yagnik, Andrej Grgic, Christel Kuik, Mark J. Lim, Kenneth J. Rothschild, Michiel Vandenbosch, Ron M. A. Heeren
Summary: A novel technique called MALDIIHC was published recently, which combines MALDI-MSI and IHC to achieve targeted imaging of biomolecules in tissue. This study explored the utility of targeted MALDIIHC and its complementarity with untargeted spatial proteomics using breast cancer tissue. The combination of multiplexed MALDI-IHC with image-guided proteomics showed great potential for disease investigation. Additionally, the effect of MALDI-2 in improving MALDI-IHC was investigated.
ANALYTICAL CHEMISTRY
(2023)
Article
Food Science & Technology
Mudita Vats, Berta Cillero-Pastor, Bryn Flinders, Eva Cuypers, Ron M. A. Heeren
Summary: This study utilized MALDI-MSI to determine the spatial distribution of flavor compounds in edible button mushrooms and optimized the sample preparation protocol and investigated the effect of heat on the distribution.
JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE
(2023)
Article
Oncology
Pierre-Maxence Vaysse, Mari F. C. M. van den Hout, Sanne M. E. Engelen, Kristien B. M. I. Keymeulen, Marc H. A. Bemelmans, Ron M. A. Heeren, Steven W. M. Olde Damink, Tiffany Porta Siegel
Summary: Lipid profiling by REIMS can accurately discriminate and identify different soft tissue sarcomas from normal tissues, providing a potential asset to improve surgical resection of soft tissue sarcomas in the future.
JOURNAL OF SURGICAL ONCOLOGY
(2023)
Review
Chemistry, Analytical
Kasper K. Krestensen, Ron M. A. Heeren, Benjamin Balluff
Summary: Mass spectrometry imaging (MSI) has evolved from a niche technique to a widely used spatial biology tool. This review provides an overview of state-of-the-art MSI applications in both established and emerging biomedical fields, serving as a reference framework for new researchers in the field.