Applying ‘Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra’ (SWATH) for systematic toxicological analysis with liquid chromatography-high-resolution tandem mass spectrometry

Development and validation of a liquid chromatography-tandem mass spectrometry (LC-MS/MS) procedure for screening of urine specimens for 100 analytes relevant in drug-facilitated crime (DFC)

(2014) Daniela Remane et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Integrated Quantification and Identification of Aldehydes and Ketones in Biological Samples

(2014) David Siegel et al.   ANALYTICAL CHEMISTRY

Liquid Chromatography High-Resolution TOF Analysis: Investigation of MSE for Broad-Spectrum Drug Screening

(2014) N. S. Chindarkar et al.   CLINICAL CHEMISTRY

Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

(2014) Yansheng Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

(2014) Hannes L Röst et al.   NATURE BIOTECHNOLOGY

Detection and identification of drugs and toxicants in human body fluids by liquid chromatography–tandem mass spectrometry under data-dependent acquisition control and automated database search

(2013) Herbert Oberacher et al.   ANALYTICA CHIMICA ACTA

Comparison of Information-Dependent Acquisition, SWATH, and MSAll Techniques in Metabolite Identification Study Employing Ultrahigh-Performance Liquid Chromatography–Quadrupole Time-of-Flight Mass Spectrometry

(2013) Xiaochun Zhu et al.   ANALYTICAL CHEMISTRY

Screening of 30 acidic and neutral pharmaceuticals in whole blood by fully automated SPE and UPLC-TOF-MSE

(2013) Petur Weihe Dalsgaard et al.   Drug Testing and Analysis

Drug Screening in Medical Examiner Casework by High-Resolution Mass Spectrometry (UPLC-MSE-TOF)

(2013) T. G. Rosano et al.   JOURNAL OF ANALYTICAL TOXICOLOGY

Evaluation of the sensitivity of the ‘Wiley registry of tandem mass spectral data, MSforID’ with MS/MS data of the ‘NIST/NIH/EPA mass spectral library’

(2013) Herbert Oberacher et al.   JOURNAL OF MASS SPECTROMETRY

Testing an alternative search algorithm for compound identification with the ‘Wiley Registry of Tandem Mass Spectral Data, MSforID’

(2013) Herbert Oberacher et al.   JOURNAL OF MASS SPECTROMETRY

Screening for illicit and medicinal drugs in whole blood using fully automated SPE and ultra-high-performance liquid chromatography with TOF-MS with data-independent acquisition

(2013) Anders Just Pedersen et al.   JOURNAL OF SEPARATION SCIENCE

Multiplexed and data-independent tandem mass spectrometry for global proteome profiling

(2013) John D. Chapman et al.   MASS SPECTROMETRY REVIEWS

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

(2013) Ben C Collins et al.   NATURE METHODS

Quantitative measurements ofN-linked glycoproteins in human plasma by SWATH-MS

(2013) Yansheng Liu et al.   PROTEOMICS

What is the future of (ultra) high performance liquid chromatography coupled to low and high resolution mass spectrometry for toxicological drug screening?

(2012) Hans H. Maurer   JOURNAL OF CHROMATOGRAPHY A

On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library. 3. Focus on ion trap and upfront CID

(2012) Herbert Oberacher et al.   JOURNAL OF MASS SPECTROMETRY

Accurate Peptide Fragment Mass Analysis: Multiplexed Peptide Identification and Quantification

(2012) Chad R. Weisbrod et al.   JOURNAL OF PROTEOME RESEARCH

Qualitative characterization of the rat liver mitochondrial lipidome using LC–MS profiling and high energy collisional dissociation (HCD) all ion fragmentation

(2012) Susan S. Bird et al.   Metabolomics

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Quality evaluation of tandem mass spectral libraries

(2011) Herbert Oberacher et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

High-resolution mass spectrometry for integrated qualitative and quantitative analysis of pharmaceuticals in biological matrices

(2011) Gérard Hopfgartner et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Evaluation of the performance of a tandem mass spectral library with mass spectral data extracted from literature

(2011) Philipp Würtinger et al.   Drug Testing and Analysis

Impact of solvent conditions on separation and detection of basic drugs by micro liquid chromatography–mass spectrometry under overloading conditions

(2011) Birthe Schubert et al.   JOURNAL OF CHROMATOGRAPHY A

Determination of deoxynivalenol, T-2 and HT-2 toxins in a bread model food by liquid chromatography–high resolution-Orbitrap-mass spectrometry equipped with a high-energy collision dissociation cell

(2011) Linda Monaci et al.   JOURNAL OF CHROMATOGRAPHY A

High-resolution chromatography/time-of-flight MSE with in silico data mining is an information-rich approach to reactive metabolite screening

(2011) Joanna E. Barbara et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Development and practical application of a library of CID accurate mass spectra of more than 2,500 toxic compounds for systematic toxicological analysis by LC–QTOF-MS with data-dependent acquisition

(2010) Sebastian Broecker et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Development of the first metabolite-based LC-MS n urine drug screening procedure-exemplified for antidepressants

(2010) Dirk K. Wissenbach et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Detection and identification of 700 drugs by multi-target screening with a 3200 Q TRAP® LC-MS/MS system and library searching

(2010) S. Dresen et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

XDIA: improving on the label-free data-independent analysis

(2010) Paulo C. Carvalho et al.   BIOINFORMATICS

Recent advances of liquid chromatography–(tandem) mass spectrometry in clinical and forensic toxicology

(2010) Frank T. Peters   CLINICAL BIOCHEMISTRY

Comprehensive identification of active compounds in tablets by flow-injection data-dependent tandem mass spectrometry combined with library search

(2010) Marion Pavlic et al.   FORENSIC SCIENCE INTERNATIONAL

Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies

(2010) Stephane Houel et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation

(2010) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Precursor Acquisition Independent From Ion Count: How to Dive Deeper into the Proteomics Ocean

(2009) Alexandre Panchaud et al.   ANALYTICAL CHEMISTRY

On the inter-instrument and inter-laboratory transferability of a tandem mass spectral reference library: 1. Results of an Austrian multicenter study

(2009) Herbert Oberacher et al.   JOURNAL OF MASS SPECTROMETRY

On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library: 2. Optimization and characterization of the search algorithm

(2009) Herbert Oberacher et al.   JOURNAL OF MASS SPECTROMETRY

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

(2009) Guo-Zhong Li et al.   PROTEOMICS

Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis

(2008) Nan Wang et al.   ANALYTICAL CHEMISTRY