Multiplexed and data-independent tandem mass spectrometry for global proteome profiling

Global Analysis of Condition-specific Subcellular Protein Distribution and Abundance

(2013) Sunhee Jung et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Peptide Fragment Mass Analysis: Multiplexed Peptide Identification and Quantification

(2012) Chad R. Weisbrod et al.   JOURNAL OF PROTEOME RESEARCH

Design and Application of a Data-Independent Precursor and Product Ion Repository

(2012) Konstantinos Thalassinos et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Secretome of the preimplantation human embryo by bottom-up label-free proteomics

(2011) Sylvia S. Cortezzi et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Increased Throughput of Proteomics Analysis by Multiplexing High-Resolution Tandem Mass Spectra

(2011) A. R. Ledvina et al.   ANALYTICAL CHEMISTRY

Faster, Quantitative, and Accurate Precursor Acquisition Independent From Ion Count

(2011) Alexandre Panchaud et al.   ANALYTICAL CHEMISTRY

Searching for the Noninvasive Biomarker Holy Grail: Are Urine Proteomics the Answer?

(2011) J. Voss et al.   Biological Research for Nursing

Selected reaction monitoring applied to proteomics

(2011) Sebastien Gallien et al.   JOURNAL OF MASS SPECTROMETRY

Data-independent Proteomic Screen Identifies Novel Tamoxifen Agonist that Mediates Drug Resistance

(2011) Shawna Mae Hengel et al.   JOURNAL OF PROTEOME RESEARCH

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

(2011) Annette Michalski et al.   JOURNAL OF PROTEOME RESEARCH

Multiplexed MS/MS in a Miniature Rectilinear Ion Trap

(2011) Adam M. Graichen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer

(2011) Annette Michalski et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: A systematic evaluation

(2011) Yishai Levin et al.   PROTEOMICS

XDIA: improving on the label-free data-independent analysis

(2010) Paulo C. Carvalho et al.   BIOINFORMATICS

Proteomic and Bioinformatic Analysis of the Root-Knot NematodeMeloidogyne hapla: The Basis for Plant Parasitism

(2010) Flaubert Mbeunkui et al.   JOURNAL OF PROTEOME RESEARCH

Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation

(2010) Kevin Blackburn et al.   JOURNAL OF PROTEOME RESEARCH

Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies

(2010) Stephane Houel et al.   JOURNAL OF PROTEOME RESEARCH

New Insights into Neuroblastoma Cisplatin Resistance: A Comparative Proteomic and Meta-Mining Investigation

(2010) Simona D’Aguanno et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation

(2010) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass spectrometry in high-throughput proteomics: ready for the big time

(2010) Tommy Nilsson et al.   NATURE METHODS

Iterative Accumulation Multiplexing Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

(2009) Jared M. Bushey et al.   ANALYTICAL CHEMISTRY

Precursor Acquisition Independent From Ion Count: How to Dive Deeper into the Proteomics Ocean

(2009) Alexandre Panchaud et al.   ANALYTICAL CHEMISTRY

Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry

(2009) Marshall Bern et al.   ANALYTICAL CHEMISTRY

Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum

(2009) Martin Gilar et al.   ELECTROPHORESIS

Proteomics data mining

(2009) Marc Wilkins   Expert Review of Proteomics

Application of Ultra Performance Liquid Chromatography−Mass Spectrometry to Profiling Rat and Dog Bile

(2009) Robert S. Plumb et al.   JOURNAL OF PROTEOME RESEARCH

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

(2009) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

(2009) Guo-Zhong Li et al.   PROTEOMICS

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS

(2009) Scott J. Geromanos et al.   PROTEOMICS

Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis

(2008) Nan Wang et al.   ANALYTICAL CHEMISTRY

Genome-Specific Gas-Phase Fractionation Strategy for Improved Shotgun Proteomic Profiling of Proteotypic Peptides

(2008) Alexander Scherl et al.   ANALYTICAL CHEMISTRY

Detection of co-eluted peptides using database search methods

(2008) Gelio Alves et al.   Biology Direct

Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments

(2008) Roland Luethy et al.   JOURNAL OF PROTEOME RESEARCH

On the Benefits of Acquiring Peptide Fragment Ions at High Measured Mass Accuracy

(2008) Alexander Scherl et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Evaluation of reproducibility of protein identification results after multidimensional human serum protein separation

(2008) Daniel Stalder et al.   PROTEOMICS

Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses

(2008) Alexander Scherl et al.   PROTEOMICS

Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies

(2007) Erin Shammel Baker et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY