Light sheet fluorescence microscopy (LSFM): past, present and future

A generic classification-based method for segmentation of nuclei in 3D images of early embryos

(2014) Jaza Gul-Mohammed et al.   BMC BIOINFORMATICS

3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy

(2014) Liang Gao et al.   Nature Protocols

A Spatial Accommodation by Neighboring Cells Is Required for Organ Initiation in Arabidopsis

(2014) J. E. M. Vermeer et al.   SCIENCE

High-resolution deep imaging of live cellular spheroids with light-sheet-based fluorescence microscopy

(2013) Francesco Pampaloni et al.   CELL AND TISSUE RESEARCH

In vivo imaging of zebrafish embryogenesis

(2013) Philipp J. Keller   METHODS

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy

(2013) Yicong Wu et al.   NATURE BIOTECHNOLOGY

OpenSpinMicroscopy: an open-source integrated microscopy platform

(2013) Emilio J Gualda et al.   NATURE METHODS

OpenSPIM: an open-access light-sheet microscopy platform

(2013) Peter G Pitrone et al.   NATURE METHODS

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

(2013) J Christof M Gebhardt et al.   NATURE METHODS

Calcium Dynamics in Root Cells of Arabidopsis thaliana Visualized with Selective Plane Illumination Microscopy

(2013) Alex Costa et al.   PLoS One

Getting into Shape

(2013) B. A. Purnell   SCIENCE

Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy

(2013) Thomas Panier et al.   Frontiers in Neural Circuits

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics

(2013) Benjamin Schmid et al.   Nature Communications

Slicing embryos gently with laser light sheets

(2012) Jan Huisken   BIOESSAYS

Noninvasive Imaging beyond the Diffraction Limit of 3D Dynamics in Thickly Fluorescent Specimens

(2012) Liang Gao et al.   CELL

Quantitative Analysis of Embryogenesis: A Perspective for Light Sheet Microscopy

(2012) Burkhard Höckendorf et al.   DEVELOPMENTAL CELL

Variational Algorithms to Remove Stationary Noise: Applications to Microscopy Imaging

(2012) J. Fehrenbach et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Preparation strategy and illumination of three-dimensional cell cultures in light sheet–based fluorescence microscopy

(2012) Thomas Bruns et al.   JOURNAL OF BIOMEDICAL OPTICS

Segmentation and tracking of live cells in phase-contrast images using directional gradient vector flow for snakes

(2012) I. SEROUSSI et al.   JOURNAL OF MICROSCOPY

Organization of Vomeronasal Sensory Coding Revealed by Fast Volumetric Calcium Imaging

(2012) D. Turaga et al.   JOURNAL OF NEUROSCIENCE

OMERO: flexible, model-driven data management for experimental biology

(2012) Chris Allan et al.   NATURE METHODS

Multiview light-sheet microscope for rapid in toto imaging

(2012) Uros Krzic et al.   NATURE METHODS

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Deep and Clear Optical Imaging of Thick Inhomogeneous Samples

(2012) Raphael Jorand et al.   PLoS One

STED-SPIM: Stimulated Emission Depletion Improves Sheet Illumination Microscopy Resolution

(2011) Mike Friedrich et al.   BIOPHYSICAL JOURNAL

Light Sheet Fluorescence Microscopy

(2011) Peter A. Santi   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Restoration of Uneven Illumination in Light Sheet Microscopy Images

(2011) Mohammad Shorif Uddin et al.   MICROSCOPY AND MICROANALYSIS

Quantitative fluorescence imaging of protein diffusion and interaction in living cells

(2011) Jérémie Capoulade et al.   NATURE BIOTECHNOLOGY

Live-cell 3D super-resolution imaging in thick biological samples

(2011) Francesca Cella Zanacchi et al.   NATURE METHODS

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination

(2011) Thomas A Planchon et al.   NATURE METHODS

Three-dimensional Fluorescence Lifetime Imaging with a Single Plane Illumination Microscope provides an improved Signal to Noise Ratio

(2011) Klaus Greger et al.   OPTICS EXPRESS

Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans

(2011) Y. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Live cell division dynamics monitoring in 3D large spheroid tumor models using light sheet microscopy

(2011) Corinne Lorenzo et al.   Cell Division

Evolving generalized Voronoi diagrams for accurate cellular image segmentation

(2010) Weimiao Yu et al.   CYTOMETRY PART A

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Bisque: a platform for bioimage analysis and management

(2009) Kristian Kvilekval et al.   BIOINFORMATICS

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

(2009) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Selective plane illumination microscopy techniques in developmental biology

(2009) J. Huisken et al.   DEVELOPMENT

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

(2009) Thouis R. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

(2008) Thouis R Jones et al.   BMC BIOINFORMATICS

Quantitative neurite outgrowth measurement based on image segmentation with topological dependence

(2008) Weimiao Yu et al.   CYTOMETRY PART A

Automatic Segmentation of High-Throughput RNAi Fluorescent Cellular Images

(2008) Pingkun Yan et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE