The Upper Respiratory Tract as a Microbial Source for Pulmonary Infections in Cystic Fibrosis. Parallels from Island Biogeography

The emerging potential of autophagy-based therapies in the treatment of cystic fibrosis lung infections

(2014) Robert D Junkins et al.   Autophagy

Mechanisms of synergy in polymicrobial infections

(2014) Justine L. Murray et al.   JOURNAL OF MICROBIOLOGY

Widespread Colonization of the Lung byTropheryma whippleiin HIV Infection

(2013) Catherine Lozupone et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

(2013) Alison Morris et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Cystic Fibrosis Therapy: A Community Ecology Perspective

(2013) Douglas Conrad et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Abundant DNase I-Sensitive Bacterial DNA in Healthy Porcine Lungs and Its Implications for the Lung Microbiome

(2013) Alejandro A. Pezzulo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Bacterial Coinfection in Influenza

(2013) Daniel S. Chertow et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

P. aeruginosa in the paranasal sinuses and transplanted lungs have similar adaptive mutations as isolates from chronically infected CF lungs

(2013) Oana Ciofu et al.   Journal of Cystic Fibrosis

Culture-based diagnostic microbiology in cystic fibrosis: Can we simplify the complexity?

(2013) Jane L. Burns et al.   Journal of Cystic Fibrosis

DNase I and Proteinase K eliminate DNA from injured or dead bacteria but not from living bacteria in microbial reference systems and natural drinking water biofilms for subsequent molecular biology analyses

(2013) Jessica Varela Villarreal et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Basic Nursing Care to Prevent Nonventilator Hospital-Acquired Pneumonia

(2013) Barbara Quinn et al.   JOURNAL OF NURSING SCHOLARSHIP

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data

(2013) Yan Wei Lim et al.   PLoS One

Impaired Functions of Macrophage from Cystic Fibrosis Patients: CD11b, TLR-5 Decrease and sCD14, Inflammatory Cytokines Increase

(2013) Karin Simonin-Le Jeune et al.   PLoS One

Microbiota and Metabolite Profiling Reveal Specific Alterations in Bacterial Community Structure and Environment in the Cystic Fibrosis Airway during Exacerbation

(2013) Kate B. Twomey et al.   PLoS One

Community surveillance enhances Pseudomonas aeruginosa virulence during polymicrobial infection

(2013) A. Korgaonkar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interpreting infective microbiota: the importance of an ecological perspective

(2013) Geraint B. Rogers et al.   TRENDS IN MICROBIOLOGY

The Cystic Fibrosis Airway Microbiome

(2013) S. V. Lynch et al.   Cold Spring Harbor Perspectives in Medicine

Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators

(2013) Rasmus Lykke Marvig et al.   PLoS Genetics

Viral and Bacterial Interactions in the Upper Respiratory Tract

(2013) Astrid A. T. M. Bosch et al.   PLoS Pathogens

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

(2013) Katherine E Price et al.   Microbiome

The Lung Tissue Microbiome in Chronic Obstructive Pulmonary Disease

(2012) Marc A. Sze et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The Human Microbiome: Our Second Genome

(2012) Elizabeth A. Grice et al.   Annual Review of Genomics and Human Genetics

Upper Respiratory Tract Microbial Communities, Acute Otitis Media Pathogens, and Antibiotic Use in Healthy and Sick Children

(2012) Melinda M. Pettigrew et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The cystic fibrosis airway microbiome

(2012) Harvey R. Rabin et al.   CURRENT OPINION IN PULMONARY MEDICINE

Longitudinal analysis of the lung microbiome in lung transplantation

(2012) Klaudyna Borewicz et al.   FEMS MICROBIOLOGY LETTERS

Oral and Airway Microbiota in HIV-Infected Pneumonia Patients

(2012) S. Iwai et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rescue of Dysfunctional Autophagy Attenuates Hyperinflammatory Responses from Cystic Fibrosis Cells

(2012) M. L. Mayer et al.   JOURNAL OF IMMUNOLOGY

Repertoire of Intensive Care Unit Pneumonia Microbiota

(2012) Sabri Bousbia et al.   PLoS One

Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

(2012) Emily S. Charlson et al.   PLoS One

The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations

(2012) Anthony A. Fodor et al.   PLoS One

The Lung Microbiome in Moderate and Severe Chronic Obstructive Pulmonary Disease

(2012) Alexa A. Pragman et al.   PLoS One

Associations between Pathogens in the Upper Respiratory Tract of Young Children: Interplay between Viruses and Bacteria

(2012) Menno R. van den Bergh et al.   PLoS One

Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota

(2012) A. F. Goddard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Quantitative Analysis of the Human Airway Microbial Ecology Reveals a Pervasive Signature for Cystic Fibrosis

(2012) P. C. Blainey et al.   Science Translational Medicine

Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience

(2012) Franziska Anne Stressmann et al.   THORAX

The microbiome of the lung

(2012) James M. Beck et al.   Translational Research

Protecting against Pneumococcal Disease: Critical Interactions between Probiotics and the Airway Microbiome

(2012) Paul V. Licciardi et al.   PLoS Pathogens

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

(2011) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung

(2011) Dana Willner et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Low-Abundance Biofilm Species Orchestrates Inflammatory Periodontal Disease through the Commensal Microbiota and Complement

(2011) George Hajishengallis et al.   Cell Host & Microbe

Our microbial selves: what ecology can teach us

(2011) Antonio Gonzalez et al.   EMBO REPORTS

Spatial distribution of microbial communities in the cystic fibrosis lung

(2011) Dana Willner et al.   ISME Journal

Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation?

(2011) Franziska A. Stressmann et al.   Journal of Cystic Fibrosis

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

(2011) Tami D Lieberman et al.   NATURE GENETICS

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

(2011) John R. Erb-Downward et al.   PLoS One

NMR spectroscopy metabolomic profiling of exhaled breath condensate in patients with stable and unstable cystic fibrosis

(2011) Paolo Montuschi et al.   THORAX

From Structure to Function: the Ecology of Host-Associated Microbial Communities

(2010) C. J. Robinson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients

(2010) Michael J. Cox et al.   PLoS One

Respiratory disease and the role of oral bacteria

(2010) Isaac S. Gomes-Filho et al.   Journal of Oral Microbiology

Moraxella catarrhalis,a Human Respiratory Tract Pathogen

(2009) Timothy F. Murphy et al.   CLINICAL INFECTIOUS DISEASES

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

(2009) Dana Willner et al.   PLoS One

Assembly and Development of the Pseudomonas aeruginosa Biofilm Matrix

(2009) Luyan Ma et al.   PLoS Pathogens

Microbiome Project Seeks to Understand Human Body’s Microscopic Residents

(2008) M. J. Friedrich   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients

(2008) C. D. Sibley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Luminal fluid tonicity regulates airway ciliary beating by altering membrane stretch and intracellular calcium

(2008) György Horváth et al.   CELL MOTILITY AND THE CYTOSKELETON