The human microbiome: opportunities and challenges for clinical care

Analyzing the Human Microbiome: A “How To” guide for Physicians

(2014) Andrea D Tyler et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Regulation of the Immune System by the Resident Intestinal Bacteria

(2014) Nobuhiko Kamada et al.   GASTROENTEROLOGY

Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health

(2014) Emily B. Hollister et al.   GASTROENTEROLOGY

Predictive modeling of gingivitis severity and susceptibility via oral microbiota

(2014) Shi Huang et al.   ISME Journal

Altered Tissue Metabolites Correlate with Microbial Dysbiosis in Colorectal Adenomas

(2014) Julia L. Nugent et al.   JOURNAL OF PROTEOME RESEARCH

16S rRNA Gene Pyrosequencing Reveals Shift in Patient Faecal Microbiota During High-Dose Chemotherapy as Conditioning Regimen for Bone Marrow Transplantation

(2014) Emmanuel Montassier et al.   MICROBIAL ECOLOGY

The microbiota regulates neutrophil homeostasis and host resistance to Escherichia coli K1 sepsis in neonatal mice

(2014) Hitesh S Deshmukh et al.   NATURE MEDICINE

The impact of postnatal antibiotics on the preterm intestinal microbiome

(2014) Majd Dardas et al.   PEDIATRIC RESEARCH

Effects of Parental Omega-3 Fatty Acid Intake on Offspring Microbiome and Immunity

(2014) Ian A. Myles et al.   PLoS One

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiota and Pelvic Inflammatory Disease

(2014) Harsha Sharma et al.   SEMINARS IN REPRODUCTIVE MEDICINE

Respiratory microbiota: addressing clinical questions, informing clinical practice

(2014) Geraint B Rogers et al.   THORAX

Adiposity, gut microbiota and faecal short chain fatty acids are linked in adult humans

(2014) J Fernandes et al.   Nutrition & Diabetes

Gut microbiota and metabolic disorders: how prebiotic can work?

(2013) Nathalie M. Delzenne et al.   BRITISH JOURNAL OF NUTRITION

Colonic bacterial metabolites and human health

(2013) Wendy R Russell et al.   CURRENT OPINION IN MICROBIOLOGY

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

(2013) Hedvig E Jakobsson et al.   GUT

The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing

(2013) Jennifer L. Pechal et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Bridging immunity and lipid metabolism by gut microbiota

(2013) Renee L. Greer et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Intestinal Dysbiosis and Depletion of Butyrogenic Bacteria in Clostridium difficile Infection and Nosocomial Diarrhea

(2013) V. C. Antharam et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Complexity, Temporal Stability, and Clinical Correlates of Airway Bacterial Community Composition in Primary Ciliary Dyskinesia

(2013) G. B. Rogers et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Fusobacterium Is Associated with Colorectal Adenomas

(2013) Amber N. McCoy et al.   PLoS One

Ventilator Associated Pneumonia: Evolving Definitions and Preventive Strategies

(2013) C. Mietto et al.   Respiratory Care

Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition

(2013) Geraint B Rogers et al.   THORAX

Structure and function of the human skin microbiome

(2013) Nina N. Schommer et al.   TRENDS IN MICROBIOLOGY

Development of intestinal microbiota in infants and its impact on health

(2013) Sebastien Matamoros et al.   TRENDS IN MICROBIOLOGY

Selecting age-related functional characteristics in the human gut microbiome

(2013) Yemin Lan et al.   Microbiome

High-Throughput Sequencing Reveals the Incomplete, Short-Term Recovery of Infant Gut Microbiota following Parenteral Antibiotic Treatment with Ampicillin and Gentamicin

(2012) Fiona Fouhy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications

(2012) Fredrik Bäckhed et al.   Cell Host & Microbe

Can we identify patients at high risk of recurrent Clostridium difficile infection?

(2012) C.P. Kelly   CLINICAL MICROBIOLOGY AND INFECTION

Dysbiosis of bifidobacteria and Clostridium cluster XIVa in the cystic fibrosis fecal microbiota

(2012) Gwen Duytschaever et al.   Journal of Cystic Fibrosis

Next-Generation Sequencing in the Analysis of Human Microbiota

(2012) Geraint B. Rogers et al.   Molecular Diagnosis & Therapy

A framework for human microbiome research

(2012)   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Microbial contact during pregnancy, intestinal colonization and human disease

(2012) Samuli Rautava et al.   Nature Reviews Gastroenterology & Hepatology

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Butyrate and Propionate Protect against Diet-Induced Obesity and Regulate Gut Hormones via Free Fatty Acid Receptor 3-Independent Mechanisms

(2012) Hua V. Lin et al.   PLoS One

The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations

(2012) Anthony A. Fodor et al.   PLoS One

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

(2012) Alison R. Erickson et al.   PLoS One

Crohn's Disease-Associated Adherent-Invasive Escherichia coli Adhesion Is Enhanced by Exposure to the Ubiquitous Dietary Polysaccharide Maltodextrin

(2012) Kourtney P. Nickerson et al.   PLoS One

Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience

(2012) Franziska Anne Stressmann et al.   THORAX

Ageing of the human metaorganism: the microbial counterpart

(2011) Elena Biagi et al.   AGE

The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases

(2011) Helena Tlaskalová-Hogenová et al.   Cellular & Molecular Immunology

Ventilation-associated pneumonia after intubation in the prehospital or the emergency unit

(2011) Lydie Decelle et al.   European Journal of Emergency Medicine

Novel concepts in evaluating antimicrobial therapy for bacterial lung infections in patients with cystic fibrosis

(2011) Geraint B. Rogers et al.   Journal of Cystic Fibrosis

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Evolution of pulmonary inflammation and nutritional status in infants and young children with cystic fibrosis

(2011) S. C. Ranganathan et al.   THORAX

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

The real cost of sequencing: higher than you think!

(2011) Andrea Sboner et al.   GENOME BIOLOGY

Bacterial Vaginosis Assessed by Gram Stain and Diminished Colonization Resistance to Incident Gonococcal, Chlamydial, and Trichomonal Genital Infection

(2010) Rebecca M. Brotman et al.   JOURNAL OF INFECTIOUS DISEASES

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of lung iron in determining the bacterial and host struggle in cystic fibrosis

(2009) D. W. Reid et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Gut microbiota: Changes throughout the lifespan from infancy to elderly

(2009) Paul W. O'Toole et al.   INTERNATIONAL DAIRY JOURNAL

Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy

(2009) A. Engelbrektson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43

(2009) Kendle M. Maslowski et al.   NATURE

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Studying bacteria in respiratory specimens by using conventional and molecular microbiological approaches

(2009) Geraint B Rogers et al.   BMC Pulmonary Medicine

Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection

(2008) I. Sekirov et al.   INFECTION AND IMMUNITY

Symbiotic gut microbes modulate human metabolic phenotypes

(2008) M. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY

Discerning the Complexity of Community Interactions Using a Drosophila Model of Polymicrobial Infections

(2008) Christopher D. Sibley et al.   PLoS Pathogens